flatironinstitute / CaImAn-MATLABLinks
Complete Matlab pipeline for large scale calcium imaging data analysis
☆256Updated 2 years ago
Alternatives and similar repositories for CaImAn-MATLAB
Users that are interested in CaImAn-MATLAB are comparing it to the libraries listed below
Sorting:
- Matlab routines for online non-rigid motion correction of calcium imaging data☆150Updated 3 years ago
- Tools for processing 2P recordings☆127Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated 11 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆90Updated 8 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆31Updated 5 years ago
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆60Updated last year
- Registration of cells across sessions.☆75Updated 10 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆75Updated 7 months ago
- Tools to work with Allen Inst CCF data in matlab☆135Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- cell detection in calcium imaging recordings☆395Updated last month
- ☆39Updated 3 years ago
- Single photon tools for Neuroscience☆35Updated last year
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆90Updated last week
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆169Updated 3 months ago
- Deconvolution of calcium imaging data☆96Updated 5 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- a visualization method for neural data☆229Updated 3 months ago
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆43Updated 11 months ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆671Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated 3 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆118Updated 10 months ago
- Code for internal lab sharing - polishing has started but is by no means complete☆127Updated last year
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- GPU code for spike sorting☆185Updated last year