flatironinstitute / CaImAn-MATLABLinks
Complete Matlab pipeline for large scale calcium imaging data analysis
☆259Updated 2 years ago
Alternatives and similar repositories for CaImAn-MATLAB
Users that are interested in CaImAn-MATLAB are comparing it to the libraries listed below
Sorting:
- Matlab routines for online non-rigid motion correction of calcium imaging data☆153Updated 3 years ago
- Tools for processing 2P recordings☆130Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆148Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Registration of cells across sessions.☆75Updated last year
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆63Updated last year
- Tools to work with Allen Inst CCF data in matlab☆143Updated 5 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆33Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- cell detection in calcium imaging recordings☆418Updated 3 months ago
- GPU code for spike sorting☆189Updated last year
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆705Updated last week
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆100Updated last week
- ☆41Updated 4 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 8 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago
- a visualization method for neural data☆240Updated 8 months ago
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- Deconvolution of calcium imaging data☆103Updated 11 months ago
- Code for internal lab sharing - polishing has started but is by no means complete☆131Updated 2 years ago
- Utilities for managing Neuropixel datasets and Kilosort results☆48Updated 7 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- A Matlab interface for reading and writing NWB files☆57Updated last week
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 2 months ago