flatironinstitute / CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
☆256Updated last year
Alternatives and similar repositories for CaImAn-MATLAB
Users that are interested in CaImAn-MATLAB are comparing it to the libraries listed below
Sorting:
- Matlab routines for online non-rigid motion correction of calcium imaging data☆150Updated 2 years ago
- Tools for processing 2P recordings☆125Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated 9 months ago
- Tools to work with Allen Inst CCF data in matlab☆134Updated last year
- Registration of cells across sessions.☆75Updated 8 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆87Updated 6 months ago
- cell detection in calcium imaging recordings☆379Updated last month
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆660Updated this week
- miniscope analysis pipeline with interactive visualizations☆93Updated 9 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 10 months ago
- GPU code for spike sorting☆184Updated last year
- Code for internal lab sharing - polishing has started but is by no means complete☆126Updated last year
- cortex lab code for electrophysiology☆81Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆140Updated this week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆115Updated 8 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆87Updated last month
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Deconvolution of calcium imaging data☆93Updated 3 months ago
- a visualization method for neural data☆222Updated last month
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆165Updated last month
- TENASPIS☆10Updated 4 years ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated last month
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆355Updated 9 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Fast spike sorting with drift correction☆526Updated this week
- [This repository is archived, will be deprecated after the release of phy 2.0]☆30Updated 5 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 5 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year