Alternatives and similar repositories for CaImAn-MATLAB:

Users that are interested in CaImAn-MATLAB are comparing it to the libraries listed below

• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆145Updated 2 years ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆124Updated last year
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆144Updated 6 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆72Updated 6 months ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆127Updated 11 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆85Updated 3 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 7 months ago
• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆370Updated last month
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆59Updated 8 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆129Updated last week
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆46Updated last year
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆112Updated 6 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• cortex-lab / spikes
  cortex lab code for electrophysiology
  ☆78Updated last year
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆164Updated 2 months ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated 2 years ago
• flatironinstitute / CaImAn
  Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…
  ☆645Updated last week
• SharpWave / TENASPIS
  TENASPIS
  ☆10Updated 4 years ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆84Updated this week
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆28Updated 4 years ago
• buzsakilab / buzcode
  Code for internal lab sharing - polishing has started but is by no means complete
  ☆125Updated last year
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆70Updated 2 months ago
• ninehundred1 / CalciumSignalExtract
  Extract regions of interest based on correlated pixel intensity
  ☆24Updated 7 years ago
• zhoupc / OASIS_matlab
  ☆34Updated 3 years ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆86Updated 3 weeks ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆64Updated 3 months ago
• open-ephys / analysis-tools
  Archived code for reading data saved by the Open Ephys GUI
  ☆59Updated last year
• MouseLand / rastermap
  a visualization method for neural data
  ☆205Updated 4 months ago
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆32Updated last year
• Aharoni-Lab / Miniscope-DAQ-QT-Software
  Software for streaming and controlling neural and behavioral data from freely behaving animals
  ☆122Updated last year