flatironinstitute / CaImAn-MATLABLinks
Complete Matlab pipeline for large scale calcium imaging data analysis
☆258Updated 2 years ago
Alternatives and similar repositories for CaImAn-MATLAB
Users that are interested in CaImAn-MATLAB are comparing it to the libraries listed below
Sorting:
- Matlab routines for online non-rigid motion correction of calcium imaging data☆152Updated 3 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- Tools for processing 2P recordings☆130Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Tools to work with Allen Inst CCF data in matlab☆142Updated 4 months ago
- Registration of cells across sessions.☆75Updated last year
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 11 months ago
- Deconvolution of calcium imaging data☆101Updated 9 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆98Updated this week
- ☆41Updated 4 years ago
- cell detection in calcium imaging recordings☆414Updated 2 months ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆699Updated this week
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆62Updated last year
- a visualization method for neural data☆238Updated 7 months ago
- GPU code for spike sorting☆189Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆78Updated 7 months ago
- Calcium Data Extraction and Analysis☆47Updated 2 years ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆53Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Utilities for managing Neuropixel datasets and Kilosort results☆49Updated 6 months ago
- Code for internal lab sharing - polishing has started but is by no means complete☆130Updated last year
- Region Of Interest Classification and Tracking☆27Updated 2 weeks ago
- Histology processing☆71Updated 2 months ago
- cortex lab code for electrophysiology☆85Updated last year