flatironinstitute / CaImAn-MATLABLinks
Complete Matlab pipeline for large scale calcium imaging data analysis
☆259Updated 2 years ago
Alternatives and similar repositories for CaImAn-MATLAB
Users that are interested in CaImAn-MATLAB are comparing it to the libraries listed below
Sorting:
- Tools for processing 2P recordings☆131Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆153Updated 3 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Updated last year
- Registration of cells across sessions.☆76Updated last year
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- ☆41Updated 4 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆123Updated last year
- SpikeGLX recording system GUI [Neuropixels NI]☆101Updated this week
- Deconvolution of calcium imaging data☆105Updated last year
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆711Updated last week
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆394Updated 2 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- Code for internal lab sharing - polishing has started but is by no means complete☆131Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- GPU code for spike sorting☆189Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Updated 2 weeks ago
- a visualization method for neural data☆241Updated 10 months ago
- Free, platform independent, behavior tracking software.☆143Updated 7 months ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- cortex lab code for electrophysiology☆85Updated 2 years ago
- Parameter-free statistical testing package☆11Updated 2 months ago
- Single photon tools for Neuroscience☆36Updated 3 months ago