Complete Matlab pipeline for large scale calcium imaging data analysis
☆260Jul 4, 2023Updated 2 years ago
Alternatives and similar repositories for CaImAn-MATLAB
Users that are interested in CaImAn-MATLAB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Matlab routines for online non-rigid motion correction of calcium imaging data☆157May 29, 2022Updated 3 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆722Apr 2, 2026Updated last week
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆152Aug 2, 2024Updated last year
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underl…☆20Oct 21, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Jun 18, 2024Updated last year
- Blazing fast calcium imaging analysis toolbox☆21Jun 20, 2017Updated 8 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 2 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆103Mar 14, 2019Updated 7 years ago
- Extract regions of interest based on correlated pixel intensity☆24May 9, 2017Updated 8 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆100Nov 14, 2024Updated last year
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 6 years ago
- up-to-date code for model-based inference of spike trains from calcium imaging☆24Apr 16, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- motion correction☆17Jan 27, 2023Updated 3 years ago
- ☆43Sep 29, 2021Updated 4 years ago
- Registration of cells across sessions.☆77Aug 20, 2024Updated last year
- cell detection in calcium imaging recordings☆440Apr 5, 2026Updated last week
- TENASPIS☆10Feb 15, 2021Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆159Feb 11, 2026Updated 2 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆56May 10, 2024Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆35Apr 9, 2020Updated 6 years ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆32Apr 11, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Implementation of the constrained deconvolution spike inference algorithm in Matlab☆13Dec 20, 2015Updated 10 years ago
- MATLAB analysis functions for Miniscope project.☆19Mar 16, 2017Updated 9 years ago
- Compression, denoising and demixing of functional imaging recordings☆29Jul 11, 2018Updated 7 years ago
- a repository containing everything relevant to our fast non-negative deconvolution work☆35Nov 28, 2016Updated 9 years ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- A toolbox for inferring spikes from calcium traces.☆23Jun 16, 2023Updated 2 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Aug 18, 2018Updated 7 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆25Apr 11, 2025Updated last year
- Single photon tools for Neuroscience☆36Oct 29, 2025Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)