zhoupc / CNMF_ELinks
Constrained Nonnegative Matrix Factorization for microEndoscopic data
☆147Updated last year
Alternatives and similar repositories for CNMF_E
Users that are interested in CNMF_E are comparing it to the libraries listed below
Sorting:
- Tools for processing 2P recordings☆130Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Deconvolution of calcium imaging data☆101Updated 9 months ago
- Tools to work with Allen Inst CCF data in matlab☆142Updated 4 months ago
- Registration of cells across sessions.☆75Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆258Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- ☆41Updated 4 years ago
- a visualization method for neural data☆238Updated 7 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆62Updated last year
- pyqt5 dependent applications for IBL sessions☆31Updated last month
- Histology processing☆71Updated 2 months ago
- Calcium Data Extraction and Analysis☆47Updated 2 years ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆46Updated 6 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 11 months ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆152Updated 3 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆98Updated last week
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- An algorithm for unsupervised discovery of sequential structure☆168Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆53Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Region Of Interest Classification and Tracking☆27Updated this week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆179Updated 3 months ago