Alternatives and similar repositories for CNMF_E

Users that are interested in CNMF_E are comparing it to the libraries listed below

• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆93Updated 9 months ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆127Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆151Updated 2 weeks ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆32Updated 5 years ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆235Updated 4 months ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆62Updated last year
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆98Updated 7 months ago
• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆36Updated 5 years ago
• flatironinstitute / CaImAn-MATLAB
  Complete Matlab pipeline for large scale calcium imaging data analysis
  ☆258Updated 2 years ago
• zhoupc / OASIS_matlab
  ☆40Updated 3 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆139Updated last month
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆45Updated 2 years ago
• petersaj / AP_histology
  Histology processing
  ☆69Updated last month
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆77Updated 8 months ago
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆43Updated 6 years ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆28Updated 3 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆51Updated last year
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆47Updated 5 years ago
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆119Updated last year
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆33Updated last year
• daharoni / Miniscope_Analysis
  MATLAB analysis functions for Miniscope project.
  ☆19Updated 8 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆76Updated 4 months ago
• tjd2002 / tjd-shared-code
  Neuroscience/electrophsyiology data analysis tools (mostly Matlab)
  ☆14Updated 6 years ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆128Updated last month
• buzsakilab / buzcode
  Code for internal lab sharing - polishing has started but is by no means complete
  ☆129Updated last year
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆53Updated 7 months ago