Alternatives and similar repositories for CNMF_E

Users that are interested in CNMF_E are comparing it to the libraries listed below

• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆89Updated 7 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated 10 months ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆126Updated last year
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 11 months ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆134Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆144Updated 3 weeks ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆60Updated last year
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆151Updated 3 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆30Updated 5 years ago
• flatironinstitute / CaImAn-MATLAB
  Complete Matlab pipeline for large scale calcium imaging data analysis
  ☆256Updated last year
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆90Updated 3 weeks ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆96Updated 5 months ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆168Updated 2 months ago
• petersaj / AP_histology
  Histology processing
  ☆66Updated 2 weeks ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆44Updated 2 years ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆226Updated 2 months ago
• buzsakilab / buzcode
  Code for internal lab sharing - polishing has started but is by no means complete
  ☆127Updated last year
• zhoupc / OASIS_matlab
  ☆38Updated 3 years ago
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆116Updated 10 months ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆74Updated 6 months ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆51Updated 5 months ago
• open-ephys / analysis-tools
  Archived code for reading data saved by the Open Ephys GUI
  ☆61Updated 2 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆70Updated 5 years ago
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆51Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆74Updated 2 months ago
• cortex-lab / spikes
  cortex lab code for electrophysiology
  ☆82Updated last year
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆27Updated this week
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆49Updated last year
• PeyracheLab / miniscoPy
  A package to analyse calcium imaging data recorded with the Miniscope.
  ☆32Updated 3 years ago