zhoupc / CNMF_ELinks
Constrained Nonnegative Matrix Factorization for microEndoscopic data
☆148Updated last year
Alternatives and similar repositories for CNMF_E
Users that are interested in CNMF_E are comparing it to the libraries listed below
Sorting:
- Tools for processing 2P recordings☆130Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Deconvolution of calcium imaging data☆103Updated 11 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆33Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- Registration of cells across sessions.☆75Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆259Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 5 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆63Updated last year
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- a visualization method for neural data☆240Updated 8 months ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- ☆41Updated 4 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- Histology processing☆71Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆153Updated 3 years ago
- ☆52Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year
- Single photon tools for Neuroscience☆36Updated 2 months ago
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆100Updated last week
- An algorithm for unsupervised discovery of sequential structure☆169Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago
- pyqt5 dependent applications for IBL sessions☆32Updated 2 months ago
- Fiber photometry data preprocessing - denoising, photobleaching and motion correction.☆27Updated 2 years ago