kushalkolar / mesmerize-vizLinks
Widgets for calcium imaging analysis visualization in notebooks
☆11Updated 8 months ago
Alternatives and similar repositories for mesmerize-viz
Users that are interested in mesmerize-viz are comparing it to the libraries listed below
Sorting:
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Updated 3 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆89Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 11 months ago
- Registration of cells across sessions.☆75Updated 10 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- A deep learning framework for synaptic event detection☆16Updated last week
- Histology processing☆66Updated 2 weeks ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆144Updated 3 weeks ago
- pipeline for volumetric cell segmentation☆12Updated this week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- For displaying spherically corrected visual stimulus on a flat screen.☆9Updated 5 months ago
- Fiber photometry analysis☆22Updated 2 months ago
- Tools to work with Allen Inst CCF data in matlab☆134Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆60Updated last year
- pyqt5 dependent applications for IBL sessions☆27Updated this week
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 8 months ago
- Tools for processing 2P recordings☆126Updated last year
- Matlab routines for online non-rigid motion correction of calcium imaging data☆151Updated 3 years ago
- A curated list of awesome Neuropixels resources.☆104Updated 3 weeks ago
- SpikeGLX recording system GUI [Neuropixels NI]☆90Updated 3 weeks ago
- Python package for analysis of dynamic fluorescence microscopy data☆100Updated 6 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated 2 months ago
- ☆52Updated 9 months ago
- Fiber Photometry Modular Analysis Tool Suite☆40Updated 3 years ago
- cell detection in calcium imaging recordings☆391Updated 2 weeks ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆74Updated 6 months ago