a visualization method for neural data
☆243Apr 4, 2025Updated 11 months ago
Alternatives and similar repositories for rastermap
Users that are interested in rastermap are comparing it to the libraries listed below
Sorting:
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Jan 26, 2026Updated last month
- cell detection in calcium imaging recordings☆438Updated this week
- Fast spike sorting with drift correction☆592Mar 5, 2026Updated 2 weeks ago
- A Python-based module for creating flexible and robust spike sorting pipelines.☆747Updated this week
- PYthon Neural Analysis Package☆362Mar 7, 2026Updated last week
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆47Sep 27, 2019Updated 6 years ago
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆399Mar 12, 2026Updated last week
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆15May 20, 2025Updated 10 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆143Mar 3, 2026Updated 2 weeks ago
- Automated quality control, curation and neuron classification of spike-sorted electrophysiology data. Available in MATLAB and in Python.☆217Mar 12, 2026Updated last week
- A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA☆39Oct 18, 2023Updated 2 years ago
- A curated list of awesome Neuropixels resources.☆128Dec 16, 2025Updated 3 months ago
- An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)☆318Dec 5, 2025Updated 3 months ago
- Zenith of Event-based Time-locked Anomalies☆15Feb 26, 2024Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Nov 14, 2024Updated last year
- A Python API for working with Neurodata stored in the NWB Format☆209Updated this week
- ☆221Jun 3, 2024Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆159Feb 11, 2026Updated last month
- NEural MOdelS, a statistical modeling framework for neuroscience.☆128Updated this week
- An implementation of piecewise linear time warping for multi-dimensional time series alignment☆188Aug 15, 2024Updated last year
- analysis tools for large-scale neural recordings☆17Apr 4, 2025Updated 11 months ago
- WIP: Python port of Kilosort2☆50Jul 8, 2023Updated 2 years ago
- ☆61Sep 5, 2022Updated 3 years ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆199Oct 3, 2024Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆85Mar 11, 2026Updated last week
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆718Feb 19, 2026Updated last month
- ☆29Oct 22, 2025Updated 4 months ago
- Compression, denoising and demixing of functional imaging recordings☆29Jul 11, 2018Updated 7 years ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆62Jul 1, 2023Updated 2 years ago
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆43Jul 23, 2019Updated 6 years ago
- A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.☆15May 13, 2018Updated 7 years ago
- Some methods for comparing network representations in deep learning and neuroscience.☆142Jul 30, 2024Updated last year
- IBL core shared libraries☆67Mar 10, 2026Updated last week
- Fast optimisation of tuning curves by iterative refitting and decoding☆14Mar 13, 2026Updated last week
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆74Updated this week
- Code for Galgali et al, 2023☆14Jan 11, 2023Updated 3 years ago
- An algorithm for unsupervised discovery of sequential structure☆170Mar 17, 2024Updated 2 years ago
- MATLAB toolbox for spike-train community detection☆15Feb 12, 2024Updated 2 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago