Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Proceedings of the National Academy of Sciences (PNAS), 2019.
☆68Sep 12, 2019Updated 7 years ago
Alternatives and similar repositories for STNeuroNet
Users that are interested in STNeuroNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- benchmarking challenge for finding neurons in imaging data☆77Apr 10, 2019Updated 7 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- ☆18May 26, 2023Updated 3 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 3 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆741Oct 12, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆27Aug 18, 2018Updated 8 years ago
- Compression, denoising and demixing of functional imaging recordings☆31Jul 11, 2018Updated 8 years ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- ☆12Nov 1, 2023Updated 3 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 3 years ago
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆13Jul 15, 2020Updated 6 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆106Mar 14, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Deconvolution of calcium imaging data☆111Sep 28, 2026Updated last month
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 3 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆91Mar 11, 2026Updated 7 months ago
- ☆224Jun 3, 2024Updated 2 years ago
- TiPi is a Java Toolkit for Inverse Problems and Imaging☆11Oct 17, 2023Updated 3 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆27Apr 11, 2025Updated last year
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34Updated this week
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆155Aug 2, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)☆28Feb 26, 2020Updated 6 years ago
- Fast Exact Spike Inference Via L0 Optimization☆16Jun 10, 2020Updated 6 years ago
- Label-free measurement of density and anisotropy from polarization-resolved images☆13Jun 4, 2023Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆103Nov 14, 2024Updated last year
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago
- ☆16Nov 2, 2016Updated 10 years ago
- Designs for 3D printed parts that were developed in the Zhuang Lab.☆11Dec 2, 2020Updated 5 years ago
- Revealing neural correlates of behavior without behavioral measurements☆18Nov 18, 2019Updated 6 years ago
- High-throughput real-time tracker for delivery of stimuli and measurement of animal behavior.☆24Jan 4, 2026Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 11 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆36Apr 9, 2020Updated 6 years ago
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 4 years ago
- TensorFlow Deconvolution for Microscopy Data☆94Apr 29, 2022Updated 4 years ago
- DeepCAD: Deep self-supervised learning for calcium imaging denoising☆128Aug 3, 2023Updated 3 years ago
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆204Jan 26, 2026Updated 9 months ago
- A Primer on Motion Capture with Deep Learning:Principles, Pitfalls and Perspectives☆22Sep 11, 2021Updated 5 years ago