Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Proceedings of the National Academy of Sciences (PNAS), 2019.
☆68Sep 12, 2019Updated 6 years ago
Alternatives and similar repositories for STNeuroNet
Users that are interested in STNeuroNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- benchmarking challenge for finding neurons in imaging data☆77Apr 10, 2019Updated 7 years ago
- ☆18May 26, 2023Updated 3 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 3 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆734Aug 2, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compression, denoising and demixing of functional imaging recordings☆31Jul 11, 2018Updated 8 years ago
- ☆43Sep 29, 2021Updated 4 years ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆27Aug 18, 2018Updated 8 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆13Jul 15, 2020Updated 6 years ago
- Deconvolution of calcium imaging data☆111Jul 15, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆91Mar 11, 2026Updated 5 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆102Nov 14, 2024Updated last year
- Python package for analysis of dynamic fluorescence microscopy data☆105Mar 14, 2019Updated 7 years ago
- Fast Exact Spike Inference Via L0 Optimization☆16Jun 10, 2020Updated 6 years ago
- ☆224Jun 3, 2024Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆153Aug 2, 2024Updated 2 years ago
- Revealing neural correlates of behavior without behavioral measurements☆18Nov 18, 2019Updated 6 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆26Apr 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- Label-free measurement of density and anisotropy from polarization-resolved images☆13Jun 4, 2023Updated 3 years ago
- A Primer on Motion Capture with Deep Learning:Principles, Pitfalls and Perspectives☆22Sep 11, 2021Updated 4 years ago
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆200Jan 26, 2026Updated 7 months ago
- High-throughput real-time tracker for delivery of stimuli and measurement of animal behavior.☆24Jan 4, 2026Updated 7 months ago
- ☆16Nov 2, 2016Updated 9 years ago
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 4 years ago
- DeepCAD: Deep self-supervised learning for calcium imaging denoising☆128Aug 3, 2023Updated 3 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆159May 29, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 8 years ago
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated last year
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆18Mar 4, 2022Updated 4 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 11 years ago
- code for reading and processing Allen Institute for Brain Science data☆396Jul 6, 2026Updated last month
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year