Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Proceedings of the National Academy of Sciences (PNAS), 2019.
☆68Sep 12, 2019Updated 6 years ago
Alternatives and similar repositories for STNeuroNet
Users that are interested in STNeuroNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- benchmarking challenge for finding neurons in imaging data☆77Apr 10, 2019Updated 7 years ago
- ☆18May 26, 2023Updated 3 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆262Jul 4, 2023Updated 3 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆728Aug 2, 2026Updated last week
- Compression, denoising and demixing of functional imaging recordings☆30Jul 11, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆42Sep 29, 2021Updated 4 years ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆27Aug 18, 2018Updated 7 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- Deconvolution of calcium imaging data☆110Jul 15, 2026Updated 3 weeks ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆90Mar 11, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- Python package for analysis of dynamic fluorescence microscopy data☆105Mar 14, 2019Updated 7 years ago
- Fast Exact Spike Inference Via L0 Optimization☆16Jun 10, 2020Updated 6 years ago
- ☆224Jun 3, 2024Updated 2 years ago
- Revealing neural correlates of behavior without behavioral measurements☆18Nov 18, 2019Updated 6 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34Updated this week
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆26Apr 11, 2025Updated last year
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- Label-free measurement of density and anisotropy from polarization-resolved images☆13Jun 4, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Primer on Motion Capture with Deep Learning:Principles, Pitfalls and Perspectives☆22Sep 11, 2021Updated 4 years ago
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆199Jan 26, 2026Updated 6 months ago
- High-throughput real-time tracker for delivery of stimuli and measurement of animal behavior.☆24Jan 4, 2026Updated 7 months ago
- TensorFlow Deconvolution for Microscopy Data☆93Apr 29, 2022Updated 4 years ago
- ☆16Nov 2, 2016Updated 9 years ago
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 4 years ago
- DeepCAD: Deep self-supervised learning for calcium imaging denoising☆127Aug 3, 2023Updated 3 years ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 8 years ago
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆18Mar 4, 2022Updated 4 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 11 years ago
- code for reading and processing Allen Institute for Brain Science data☆394Jul 6, 2026Updated last month
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- dataset info for the neurofinder challenge☆13Aug 3, 2016Updated 10 years ago
- Image processing and tools for widefield imaging☆20Dec 7, 2019Updated 6 years ago
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 15, 2026Updated last month