soltanianzadeh / STNeuroNetLinks
Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Proceedings of the National Academy of Sciences (PNAS), 2019.
☆67Updated 6 years ago
Alternatives and similar repositories for STNeuroNet
Users that are interested in STNeuroNet are comparing it to the libraries listed below
Sorting:
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆130Updated 3 weeks ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Updated 2 years ago
- ☆17Updated 2 years ago
- Developing a Brain Atlas through Deep Learning☆53Updated 3 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆139Updated 2 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- ☆40Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆53Updated 2 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- Calcium Data Extraction and Analysis☆47Updated 2 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Deep Learning for EM Connectomics☆15Updated 3 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 3 months ago
- Multi-modal Image Registration And Connectivity anaLysis☆46Updated this week
- motion correction☆17Updated 2 years ago
- DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning☆123Updated 5 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆44Updated 3 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆57Updated 3 weeks ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆152Updated 3 years ago
- ☆34Updated 6 months ago
- Matlab function to import ROIs from ImageJ☆27Updated 5 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆24Updated 7 months ago
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆91Updated 3 months ago
- www.vaa3d.org☆113Updated last year
- ☆45Updated 5 years ago