MLspike / spikesLinks
spike extraction from calcium signals (Deneux et al., 2016)
☆30Updated 5 years ago
Alternatives and similar repositories for spikes
Users that are interested in spikes are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- motion correction☆17Updated 2 years ago
- Control and design of two-photon photostimulation experiments☆16Updated last year
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆89Updated 6 months ago
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- ☆36Updated 3 years ago
- Pre-processing pipeline for widefield data☆11Updated 4 years ago
- Region Of Interest Classification and Tracking☆19Updated this week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- miniscope analysis pipeline with interactive visualizations☆93Updated 10 months ago
- Histology processing☆65Updated last month
- ☆34Updated 2 weeks ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- pyqt5 dependent applications for IBL sessions☆27Updated last week
- For displaying spherically corrected visual stimulus on a flat screen.☆9Updated 5 months ago
- Single photon tools for Neuroscience☆35Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 11 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆26Updated 3 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Serial-section automated anatomy extension for ScanImage☆13Updated 3 weeks ago
- Deconvolution of calcium imaging data☆95Updated 4 months ago
- pipeline for volumetric cell segmentation☆12Updated 2 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated last week
- Algorithm for automated source extraction from 1P data☆20Updated last year
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆34Updated 2 months ago