MLspike / spikesLinks
spike extraction from calcium signals (Deneux et al., 2016)
☆32Updated 5 years ago
Alternatives and similar repositories for spikes
Users that are interested in spikes are comparing it to the libraries listed below
Sorting:
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- ☆41Updated 4 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- motion correction☆17Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated 2 weeks ago
- Single photon tools for Neuroscience☆36Updated last month
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆148Updated last year
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Tools for processing 2P recordings☆130Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Control and design of two-photon photostimulation experiments☆17Updated last year
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated 11 months ago
- Deconvolution of calcium imaging data☆101Updated 10 months ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 4 months ago
- Registration of cells across sessions.☆75Updated last year
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Histology processing☆71Updated 2 months ago
- ☆52Updated last year
- Pre-processing pipeline for widefield data☆12Updated 4 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆63Updated last year
- pyqt5 dependent applications for IBL sessions☆31Updated 2 months ago
- Serial-section automated anatomy extension for ScanImage☆17Updated last month
- Region Of Interest Classification and Tracking☆27Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 7 months ago