MLspike / spikesLinks
spike extraction from calcium signals (Deneux et al., 2016)
☆32Updated 5 years ago
Alternatives and similar repositories for spikes
Users that are interested in spikes are comparing it to the libraries listed below
Sorting:
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆97Updated 10 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- motion correction☆17Updated 2 years ago
- Tools for processing 2P recordings☆128Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆152Updated 2 weeks ago
- ☆40Updated 4 years ago
- Calcium Data Extraction and Analysis☆46Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Single photon tools for Neuroscience☆36Updated last year
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Deconvolution of calcium imaging data☆100Updated 8 months ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Registration of cells across sessions.☆76Updated last year
- Control and design of two-photon photostimulation experiments☆17Updated last year
- Tools to work with Allen Inst CCF data in matlab☆142Updated 2 months ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- a visualization method for neural data☆236Updated 6 months ago
- Region Of Interest Classification and Tracking☆26Updated last week
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- Pre-processing pipeline for widefield data☆11Updated 4 years ago
- ☆52Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆78Updated 9 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆62Updated last year
- Histology processing☆70Updated 3 weeks ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆47Updated 6 years ago
- pyqt5 dependent applications for IBL sessions☆29Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆77Updated 5 months ago
- Revealing neural correlates of behavior without behavioral measurements☆15Updated 5 years ago