porteralab / EZcalcium
Calcium Data Extraction and Analysis
☆44Updated 2 years ago
Alternatives and similar repositories for EZcalcium
Users that are interested in EZcalcium are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆87Updated 5 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago
- ☆51Updated 8 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆140Updated last week
- motion correction☆17Updated 2 years ago
- ☆34Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 9 months ago
- Histology processing☆64Updated 3 weeks ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated 2 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 5 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- ☆36Updated 3 years ago
- Algorithm for automated source extraction from 1P data☆21Updated last year
- Registration of cells across sessions.☆75Updated 8 months ago
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 10 months ago
- Fiber Photometry Modular Analysis Tool Suite☆38Updated 3 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 3 months ago
- Region Of Interest Classification and Tracking☆18Updated this week
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆121Updated 3 months ago