porteralab / EZcalciumLinks
Calcium Data Extraction and Analysis
☆49Updated 3 years ago
Alternatives and similar repositories for EZcalcium
Users that are interested in EZcalcium are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆56Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 2 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 4 months ago
- ☆52Updated last year
- Histology processing☆72Updated last month
- Activity Quantification and Analysis for molecular spatiotemporal signals☆33Updated last month
- Registration of cells across sessions.☆75Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 2 weeks ago
- Voltage imaging analysis in python☆10Updated 4 years ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 6 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- motion correction☆17Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Updated last year
- ☆41Updated 4 years ago
- Serial-section automated anatomy extension for ScanImage☆17Updated this week
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Calcium imaging inter-session alignment☆15Updated last month
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆64Updated last year
- Tools for processing 2P recordings☆131Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆30Updated 2 years ago