porteralab / EZcalcium
Calcium Data Extraction and Analysis
☆43Updated 2 years ago
Alternatives and similar repositories for EZcalcium:
Users that are interested in EZcalcium are comparing it to the libraries listed below
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆46Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆85Updated 3 months ago
- ☆33Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- miniscope analysis pipeline with interactive visualizations☆93Updated 7 months ago
- ☆52Updated 5 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆64Updated 3 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 4 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆129Updated last week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated 9 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- Algorithm for automated source extraction from 1P data☆21Updated last year
- Histology processing☆64Updated 11 months ago
- Match suite2p ROIs between imaging sessions☆24Updated 5 years ago
- motion correction☆16Updated 2 years ago
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆70Updated 2 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Registration of cells across sessions.☆72Updated 5 months ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated last year
- ☆34Updated 3 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 8 months ago
- Fiber photometry analysis☆22Updated 2 months ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 7 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- Large field-of-view miniature microscope for rats and larger animals.☆13Updated last year