porteralab / EZcalcium
Calcium Data Extraction and Analysis
☆43Updated 2 years ago
Alternatives and similar repositories for EZcalcium:
Users that are interested in EZcalcium are comparing it to the libraries listed below
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆48Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 4 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆133Updated this week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Histology processing☆65Updated 2 weeks ago
- ☆51Updated 6 months ago
- miniscope analysis pipeline with interactive visualizations☆92Updated 8 months ago
- ☆34Updated last year
- ☆35Updated 3 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated 2 weeks ago
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- Registration of cells across sessions.☆73Updated 7 months ago
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆71Updated 3 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 6 months ago
- motion correction☆17Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 3 weeks ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆32Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 9 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆86Updated last week
- pyqt5 dependent applications for IBL sessions☆26Updated last week
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago
- Fiber photometry analysis☆22Updated 3 months ago
- Tools to work with Allen Inst CCF data in matlab☆130Updated last year