Calcium Data Extraction and Analysis
☆50Dec 5, 2022Updated 3 years ago
Alternatives and similar repositories for EZcalcium
Users that are interested in EZcalcium are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆100Nov 14, 2024Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆153Aug 2, 2024Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆89Mar 11, 2026Updated 2 months ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 2 years ago
- cell detection in calcium imaging recordings☆449May 3, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12Apr 29, 2026Updated last month
- benchmarking challenge for finding neurons in imaging data☆76Apr 10, 2019Updated 7 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆162May 8, 2026Updated 3 weeks ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆723Apr 16, 2026Updated last month
- ☆33May 19, 2025Updated last year
- Matlab routines for online non-rigid motion correction of calcium imaging data☆156May 29, 2022Updated 4 years ago
- ☆42Sep 29, 2021Updated 4 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆17May 26, 2023Updated 3 years ago
- ImgLib2-based viewer for registered SPIM stacks and more☆43Mar 20, 2026Updated 2 months ago
- Aligning images acquired with the IBEX microscopy imaging technique☆20Apr 12, 2026Updated last month
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Nov 26, 2023Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆12Mar 3, 2023Updated 3 years ago
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆20May 21, 2026Updated last week
- Calcium imaging inter-session alignment☆17May 15, 2026Updated 2 weeks ago
- Registration of cells across sessions.☆78Aug 20, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆223Jun 3, 2024Updated last year
- BIRDS plug-in on Fiji and attached jar package☆22Oct 7, 2021Updated 4 years ago
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated last year
- ☆14Feb 21, 2024Updated 2 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and di…☆35Oct 6, 2023Updated 2 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆57Apr 29, 2026Updated last month
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- Algorithm for automated source extraction from 1P data☆23Jun 16, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆38Apr 30, 2026Updated 3 weeks ago
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated 9 months ago
- up-to-date code for model-based inference of spike trains from calcium imaging☆24Apr 16, 2018Updated 8 years ago
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- A Julia package to simulate light propagation in optical systems☆27May 3, 2026Updated 3 weeks ago
- ☆11Apr 10, 2023Updated 3 years ago