Alternatives and similar repositories for suite2p

Users that are interested in suite2p are comparing it to the libraries listed below

• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆126Updated last year
• MouseLand / rastermap
  a visualization method for neural data
  ☆226Updated 2 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated 10 months ago
• flatironinstitute / CaImAn
  Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…
  ☆668Updated last week
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆144Updated 3 weeks ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆134Updated last year
• cortex-lab / phy
  phy: interactive visualization and manual spike sorting of large-scale ephys data
  ☆360Updated 10 months ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆168Updated 2 months ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆68Updated 3 weeks ago
• pynapple-org / pynapple
  PYthon Neural Analysis Package
  ☆316Updated this week
• MouseLand / Kilosort
  Fast spike sorting with drift correction
  ☆532Updated this week
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 11 months ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆215Updated this week
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆147Updated 10 months ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆135Updated 3 weeks ago
• flatironinstitute / CaImAn-MATLAB
  Complete Matlab pipeline for large scale calcium imaging data analysis
  ☆256Updated last year
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆90Updated 3 weeks ago
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆116Updated 10 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆89Updated 7 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆151Updated 3 years ago
• petersaj / AP_histology
  Histology processing
  ☆66Updated 2 weeks ago
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆185Updated last year
• SpikeInterface / spikeinterface
  A Python-based module for creating flexible and robust spike sorting pipelines.
  ☆609Updated last week
• NeurodataWithoutBorders / pynwb
  A Python API for working with Neurodata stored in the NWB Format
  ☆194Updated this week
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆40Updated 3 years ago
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆104Updated 3 weeks ago
• AllenInstitute / AllenSDK
  code for reading and processing Allen Institute for Brain Science data
  ☆361Updated last year
• cortex-lab / spikes
  cortex lab code for electrophysiology
  ☆82Updated last year
• SpikeInterface / spiketutorials
  Tutorials for using SpikeInterface on extracellular datasets.
  ☆65Updated last year