MouseLand / suite2pLinks
cell detection in calcium imaging recordings
☆417Updated 3 months ago
Alternatives and similar repositories for suite2p
Users that are interested in suite2p are comparing it to the libraries listed below
Sorting:
- a visualization method for neural data☆240Updated 8 months ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 5 months ago
- Registration of cells across sessions.☆75Updated last year
- Tools for processing 2P recordings☆130Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆705Updated last week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆386Updated 2 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- PYthon Neural Analysis Package☆342Updated 2 weeks ago
- Histology processing☆71Updated last week
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆138Updated last week
- SpikeGLX recording system GUI [Neuropixels NI]☆100Updated last week
- Free, platform independent, behavior tracking software.☆143Updated 6 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- GPU code for spike sorting☆189Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 8 months ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆148Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Fast spike sorting with drift correction☆579Updated last month
- A curated list of awesome Neuropixels resources.☆121Updated last week
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 2 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- cortex lab code for electrophysiology☆85Updated last year
- A Python API for working with Neurodata stored in the NWB Format☆207Updated 2 weeks ago
- A Python interface to access neuroanatomical atlases☆168Updated last week