MouseLand / suite2pLinks
cell detection in calcium imaging recordings
☆427Updated 5 months ago
Alternatives and similar repositories for suite2p
Users that are interested in suite2p are comparing it to the libraries listed below
Sorting:
- a visualization method for neural data☆241Updated 10 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- Registration of cells across sessions.☆76Updated last year
- Tools for processing 2P recordings☆131Updated 2 years ago
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆394Updated 2 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Updated 2 weeks ago
- Fast spike sorting with drift correction☆586Updated last week
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated last week
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆711Updated last week
- PYthon Neural Analysis Package☆354Updated this week
- Free, platform independent, behavior tracking software.☆143Updated 7 months ago
- A Python-based module for creating flexible and robust spike sorting pipelines.☆725Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- Histology processing☆72Updated last month
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆101Updated this week
- A curated list of awesome Neuropixels resources.☆124Updated last month
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆123Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Automated 3D cell detection in very large images☆223Updated last week
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆140Updated 3 weeks ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Updated last year
- A Python API for working with Neurodata stored in the NWB Format☆207Updated this week
- cortex lab code for electrophysiology☆85Updated 2 years ago
- GPU code for spike sorting☆189Updated last year
- Calcium Data Extraction and Analysis☆49Updated 3 years ago