cell detection in calcium imaging recordings
☆438Mar 15, 2026Updated last week
Alternatives and similar repositories for suite2p
Users that are interested in suite2p are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆718Feb 19, 2026Updated last month
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆159Feb 11, 2026Updated last month
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 6 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆188Jan 26, 2026Updated last month
- ☆41Sep 29, 2021Updated 4 years ago
- a visualization method for neural data☆243Apr 4, 2025Updated 11 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆100Nov 14, 2024Updated last year
- Registration of cells across sessions.☆77Aug 20, 2024Updated last year
- Fast spike sorting with drift correction☆595Mar 5, 2026Updated 2 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Nov 26, 2023Updated 2 years ago
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆85Mar 11, 2026Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆258Jul 4, 2023Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆155May 29, 2022Updated 3 years ago
- Deconvolution of calcium imaging data☆105Jan 21, 2025Updated last year
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆32May 28, 2024Updated last year
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆13Jan 1, 2024Updated 2 years ago
- Elephant is the Electrophysiology Analysis Toolkit☆236Mar 8, 2026Updated 2 weeks ago
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,114Mar 16, 2026Updated last week
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆402Updated this week
- A Python package to visualise neuroanatomical data in atlas space☆633Mar 13, 2026Updated last week
- benchmarking challenge for finding neurons in imaging data☆75Apr 10, 2019Updated 6 years ago
- miniscope analysis pipeline with interactive visualizations☆98Jul 19, 2024Updated last year
- Control and design of two-photon photostimulation experiments☆18Jan 1, 2024Updated 2 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆103Mar 14, 2019Updated 7 years ago
- Image processing and tools for widefield imaging☆20Dec 7, 2019Updated 6 years ago
- code for reading and processing Allen Institute for Brain Science data☆378Feb 20, 2026Updated last month
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆106Oct 27, 2023Updated 2 years ago
- Automated 3D cell detection in very large images☆227Mar 12, 2026Updated last week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆125Aug 18, 2024Updated last year
- Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. human…☆5,556Updated this week
- ☆221Jun 3, 2024Updated last year
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34Mar 16, 2026Updated last week
- Jax implementation of normcorre☆14Jan 25, 2025Updated last year
- A Matlab application for electrophysiology data analysis☆22Apr 4, 2025Updated 11 months ago
- a Python machine learning library for neurophysiology data☆36Nov 10, 2018Updated 7 years ago
- Code for internal lab sharing - polishing has started but is by no means complete