cell detection in calcium imaging recordings
☆475Sep 12, 2026Updated last month
Alternatives and similar repositories for suite2p
Users that are interested in suite2p are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆741Oct 12, 2026Updated 2 weeks ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 3 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆171Updated this week
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆204Jan 26, 2026Updated 9 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆103Nov 14, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- a visualization method for neural data☆257Apr 4, 2025Updated last year
- ☆43Sep 29, 2021Updated 5 years ago
- Fast spike sorting with drift correction☆636Sep 25, 2026Updated last month
- Registration of cells across sessions.☆82Jul 2, 2026Updated 3 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆91Mar 11, 2026Updated 7 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆63Nov 26, 2023Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆160May 29, 2022Updated 4 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆58Sep 15, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 3 years ago
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- A Python package to visualise neuroanatomical data in atlas space☆682Oct 13, 2026Updated 2 weeks ago
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆13Jan 1, 2024Updated 2 years ago
- Elephant is the Electrophysiology Analysis Toolkit☆244Oct 21, 2026Updated last week
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆435Updated this week
- Deconvolution of calcium imaging data☆111Sep 28, 2026Updated last month
- Control and design of two-photon photostimulation experiments☆18Jan 1, 2024Updated 2 years ago
- Automated 3D cell detection in very large images☆232Oct 23, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- benchmarking challenge for finding neurons in imaging data☆77Apr 10, 2019Updated 7 years ago
- miniscope analysis pipeline with interactive visualizations☆101Aug 25, 2026Updated 2 months ago
- A program for viewing and analyzing electrophysiological data☆62Oct 15, 2026Updated 2 weeks ago
- PYthon Neural Analysis Package☆382Oct 24, 2026Updated last week
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆33May 28, 2024Updated 2 years ago
- Image processing and tools for widefield imaging☆20Dec 7, 2019Updated 6 years ago
- ☆224Jun 3, 2024Updated 2 years ago
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,423Jun 14, 2026Updated 4 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆131Aug 18, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python package for analysis of dynamic fluorescence microscopy data☆106Mar 14, 2019Updated 7 years ago
- A Python-based module for creating flexible and robust spike sorting pipelines.☆870Updated this week
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆111Oct 27, 2023Updated 3 years ago
- Tools to work with Allen Inst CCF data in matlab☆155Jul 15, 2025Updated last year
- A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA☆39Oct 18, 2023Updated 3 years ago
- Region Of Interest Classification and Tracking☆42Updated this week
- code for reading and processing Allen Institute for Brain Science data☆400Jul 6, 2026Updated 3 months ago