MouseLand / suite2pLinks
cell detection in calcium imaging recordings
☆393Updated last month
Alternatives and similar repositories for suite2p
Users that are interested in suite2p are comparing it to the libraries listed below
Sorting:
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- Registration of cells across sessions.☆75Updated 10 months ago
- Tools to work with Allen Inst CCF data in matlab☆135Updated last year
- a visualization method for neural data☆229Updated 3 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆169Updated 3 months ago
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- Tools for processing 2P recordings☆127Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Updated last month
- Histology processing☆66Updated last month
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated 11 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆75Updated 7 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆40Updated 3 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated 3 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆60Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆670Updated 2 weeks ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆90Updated 8 months ago
- ☆52Updated 10 months ago
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆363Updated 11 months ago
- PYthon Neural Analysis Package☆318Updated this week
- Complete Matlab pipeline for large scale calcium imaging data analysis☆256Updated 2 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆90Updated last week
- Free, platform independent, behavior tracking software.☆136Updated 3 weeks ago
- A gui for browsing joint calcium imaging + behavioral data.☆52Updated 5 months ago
- A Python API for working with Neurodata stored in the NWB Format☆195Updated last week
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆103Updated 7 months ago
- Fast spike sorting with drift correction☆540Updated last week
- Automated 3D cell detection in very large images☆216Updated last week