Alternatives and similar repositories for suite2p

Users that are interested in suite2p are comparing it to the libraries listed below

• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆143Updated 6 months ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆131Updated 2 years ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆158Updated last month
• MouseLand / rastermap
  a visualization method for neural data
  ☆241Updated 9 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆97Updated last year
• flatironinstitute / CaImAn
  Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…
  ☆707Updated this week
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆181Updated 5 months ago
• cortex-lab / phy
  phy: interactive visualization and manual spike sorting of large-scale ephys data
  ☆388Updated last month
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆42Updated 4 years ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆151Updated last year
• petersaj / AP_histology
  Histology processing
  ☆72Updated 3 weeks ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆79Updated 9 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆56Updated 2 years ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 4 months ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆100Updated this week
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• flatironinstitute / CaImAn-MATLAB
  Complete Matlab pipeline for large scale calcium imaging data analysis
  ☆259Updated 2 years ago
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆122Updated last month
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆82Updated last year
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆143Updated 6 months ago
• pynapple-org / pynapple
  PYthon Neural Analysis Package
  ☆343Updated this week
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆139Updated last month
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆189Updated last year
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆64Updated last year
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆122Updated last year
• NeurodataWithoutBorders / pynwb
  A Python API for working with Neurodata stored in the NWB Format
  ☆207Updated this week
• Whitlock-Group / HERBS
  ☆52Updated last year
• jenniferColonell / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆64Updated last month