Alternatives and similar repositories for Miniscope_Analysis:

Users that are interested in Miniscope_Analysis are comparing it to the libraries listed below

• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆24Updated 5 years ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆86Updated last month
• tjd2002 / tjd-shared-code
  Neuroscience/electrophsyiology data analysis tools (mostly Matlab)
  ☆14Updated 5 years ago
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆32Updated last year
• zhoupc / OASIS_matlab
  ☆34Updated 3 years ago
• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆34Updated 5 years ago
• PeyracheLab / miniscoPy
  A package to analyse calcium imaging data recorded with the Miniscope.
  ☆32Updated 2 years ago
• nelpy / nelpy
  Neuroelectrophysiology object model and data analysis in Python.
  ☆50Updated 2 months ago
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆32Updated last year
• simonarvin / braincoordinator
  Open-source stereotaxic coordinator
  ☆15Updated 2 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆28Updated 4 years ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆65Updated 2 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆70Updated 2 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆36Updated 4 months ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆16Updated this week
• Whitlock-Group / HERBS
  ☆52Updated 5 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆85Updated 3 months ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆44Updated 5 years ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆51Updated last month
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆25Updated last week
• inscopix / inscopix-cnmfe
  Algorithm for automated source extraction from 1P data
  ☆21Updated last year
• JaneliaSciComp / JRCLUST
  JRCLUST
  ☆34Updated 9 months ago
• petersaj / AP_histology
  Histology processing
  ☆64Updated 11 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆72Updated 6 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆73Updated 5 months ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆54Updated this week
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 7 months ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆54Updated 9 months ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆51Updated this week