daharoni / Miniscope_AnalysisLinks
MATLAB analysis functions for Miniscope project.
☆19Updated 8 years ago
Alternatives and similar repositories for Miniscope_Analysis
Users that are interested in Miniscope_Analysis are comparing it to the libraries listed below
Sorting:
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Updated last year
- Deconvolution of calcium imaging data☆104Updated 11 months ago
- miniscope analysis pipeline with interactive visualizations☆97Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Registration of cells across sessions.☆75Updated last year
- Tools for processing 2P recordings☆131Updated 2 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆33Updated 3 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 2 months ago
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆32Updated last year
- Histology processing☆72Updated last month
- IBL core shared libraries☆66Updated this week
- Open-source stereotaxic coordinator☆15Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆46Updated 6 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.☆50Updated 4 years ago
- ☆52Updated last year
- SpikeGLX recording system GUI [Neuropixels NI]☆100Updated last week
- "Approaches to Study Neural Circuits" course☆65Updated last year
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 11 months ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 6 months ago
- Analysis package for miniscope data☆14Updated 3 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆139Updated last month
- Algorithm for automated source extraction from 1P data☆23Updated 2 years ago