daharoni / Miniscope_AnalysisLinks
MATLAB analysis functions for Miniscope project.
☆19Updated 8 years ago
Alternatives and similar repositories for Miniscope_Analysis
Users that are interested in Miniscope_Analysis are comparing it to the libraries listed below
Sorting:
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆152Updated last year
- Tools for processing 2P recordings☆131Updated 2 years ago
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆28Updated 6 years ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago
- IBL core shared libraries☆66Updated this week
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Code accompanying Steinmetz et al., 2019☆60Updated 4 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.☆50Updated 4 years ago
- Registration of cells across sessions.☆76Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆101Updated last week
- Deconvolution of calcium imaging data☆105Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Neuroelectrophysiology object model and data analysis in Python.☆50Updated 2 weeks ago
- a visualization method for neural data☆241Updated 10 months ago
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆43Updated 6 years ago
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆123Updated last year
- pyqt5 dependent applications for IBL sessions☆32Updated 2 weeks ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆46Updated 6 years ago
- Region Of Interest Classification and Tracking☆27Updated last week
- Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data☆98Updated 3 years ago
- Automatic spike sorting up to 64 channels☆54Updated 4 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆43Updated 10 months ago
- ☆41Updated 4 years ago
- A Matlab interface for reading and writing NWB files☆57Updated 2 weeks ago