daharoni / Miniscope_AnalysisLinks
MATLAB analysis functions for Miniscope project.
☆19Updated 8 years ago
Alternatives and similar repositories for Miniscope_Analysis
Users that are interested in Miniscope_Analysis are comparing it to the libraries listed below
Sorting:
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated 11 months ago
- Tools for processing 2P recordings☆127Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- Revealing neural correlates of behavior without behavioral measurements☆14Updated 5 years ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆46Updated 5 years ago
- IBL core shared libraries☆63Updated 2 weeks ago
- Functions to assess quality of spike sorting results☆34Updated last year
- Deconvolution of calcium imaging data☆96Updated 5 months ago
- Histology processing☆66Updated last month
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Registration of cells across sessions.☆75Updated 10 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆126Updated 2 weeks ago
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- "Approaches to Study Neural Circuits" course☆65Updated 7 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆103Updated 7 months ago
- ☆52Updated 10 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆90Updated 8 months ago
- Mesoscale activity ephys ingest schema☆11Updated last year
- SpikeGLX recording system GUI [Neuropixels NI]☆90Updated last week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated 3 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆52Updated 5 months ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆33Updated last year
- Tools to work with Allen Inst CCF data in matlab☆135Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆31Updated 5 years ago
- a visualization method for neural data☆229Updated 3 months ago
- Neuroelectrophysiology object model and data analysis in Python.☆50Updated 4 months ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 9 months ago
- Code for internal lab sharing - polishing has started but is by no means complete☆127Updated last year