agshumate / LiftoffToolsLinks
☆27Updated 2 years ago
Alternatives and similar repositories for LiftoffTools
Users that are interested in LiftoffTools are comparing it to the libraries listed below
Sorting:
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 11 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆37Updated last year
- FastK based version of Merqury☆28Updated 3 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated 5 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- ☆18Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 7 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- SV calling for diploid assemblies☆28Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated 3 weeks ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- ☆36Updated last month
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- Chromosome-level synteny plotting using orthologous regions☆29Updated 11 months ago
- ☆30Updated 8 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 5 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Multi-genome synteny block visualization tool☆44Updated 7 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated last week
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago