agshumate / LiftoffToolsLinks
☆27Updated last year
Alternatives and similar repositories for LiftoffTools
Users that are interested in LiftoffTools are comparing it to the libraries listed below
Sorting:
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- ☆37Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Yet another Hi-C scaffolding tool☆21Updated 8 months ago
- SV calling for diploid assemblies☆28Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆40Updated 3 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 7 months ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- ☆25Updated 10 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆36Updated 5 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 11 months ago
- A tool for evaluating long-read de novo assembly results☆36Updated 10 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆33Updated 3 months ago