☆30Aug 1, 2023Updated 2 years ago
Alternatives and similar repositories for LiftoffTools
Users that are interested in LiftoffTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- Tools for working with agp files☆19Jun 26, 2025Updated 9 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- An accurate GFF3/GTF lift over pipeline☆531Aug 1, 2023Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated last month
- ☆39Feb 22, 2023Updated 3 years ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 3 weeks ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆38Feb 15, 2025Updated last year
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- ANI based satellite annotation☆26Mar 2, 2026Updated 3 weeks ago
- ☆13Nov 15, 2017Updated 8 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- ☆42Feb 15, 2026Updated last month
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 2 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 4 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 4 months ago
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Find and visualize rearrangements in DNA sequences☆55Dec 1, 2025Updated 3 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆121Feb 12, 2026Updated last month
- ☆68Updated this week
- Genome Assembly 102☆17Apr 23, 2025Updated 11 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Oct 13, 2024Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated last month
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Feb 20, 2024Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆192May 11, 2025Updated 10 months ago
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 5 months ago