☆30Aug 1, 2023Updated 2 years ago
Alternatives and similar repositories for LiftoffTools
Users that are interested in LiftoffTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- An accurate GFF3/GTF lift over pipeline☆546Aug 1, 2023Updated 2 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 4 months ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated last month
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ANI based satellite annotation☆26Jun 9, 2026Updated 3 weeks ago
- ☆13Nov 15, 2017Updated 8 years ago
- ☆46Apr 18, 2026Updated 2 months ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 5 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆207Nov 23, 2025Updated 7 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated last month
- Variant Calling for the HPRC2☆16May 26, 2026Updated last month
- Genotyping of copy number sensitive allele-specific haplotypes☆28Jun 18, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 5 months ago
- Find and visualize rearrangements in DNA sequences☆55Jun 3, 2026Updated last month
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆125Jun 18, 2026Updated 2 weeks ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Alignment-free pangenome browser and analysis toolkit☆84May 18, 2026Updated last month
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 3 weeks ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆24Feb 16, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 2 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- General purpose utility related to GAF files☆29May 20, 2026Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆197May 11, 2025Updated last year
- A genome completeness evaluation tool based on miniprot☆248Jun 20, 2026Updated 2 weeks ago