agshumate / LiftoffTools
☆25Updated last year
Alternatives and similar repositories for LiftoffTools:
Users that are interested in LiftoffTools are comparing it to the libraries listed below
- Improved Phased Assembler☆28Updated 2 years ago
- ☆35Updated 11 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 4 months ago
- ☆22Updated 6 months ago
- assembly evaluation tool☆34Updated 2 years ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆29Updated 2 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- FastK based version of Merqury☆22Updated last week
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆30Updated 2 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 months ago
- ☆14Updated 10 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- SV calling for diploid assemblies☆24Updated 10 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- SV genotyper for long reads with a variation graph☆12Updated last year
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- ☆30Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago