agshumate / LiftoffToolsLinks
☆29Updated 2 years ago
Alternatives and similar repositories for LiftoffTools
Users that are interested in LiftoffTools are comparing it to the libraries listed below
Sorting:
- ☆19Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- ☆38Updated 3 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- TD2☆31Updated this week
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Consensus genome annotation using OMA☆31Updated this week
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- ☆44Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- ☆38Updated 3 weeks ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- FastK based version of Merqury☆30Updated 3 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- SV calling for diploid assemblies☆30Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆29Updated this week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆50Updated last week
- Kmer Analysis of Pileups for Genotyping☆35Updated this week
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆50Updated last month