ksahlin / isONcorrect
Error correction of ONT transcript reads
☆58Updated last year
Alternatives and similar repositories for isONcorrect:
Users that are interested in isONcorrect are comparing it to the libraries listed below
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated this week
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 5 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- ☆47Updated 7 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Simple pileup-based variant caller☆87Updated last month
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- ☆26Updated 3 weeks ago
- ☆29Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆25Updated 3 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆47Updated 2 years ago
- A program for assessing the T2T genome continuity☆69Updated 3 weeks ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- ☆79Updated last month
- perSVade: personalized Structural Variation detection☆38Updated last month
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆50Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆43Updated 8 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 5 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- UCSC Nanopore☆43Updated 5 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago