natir / fpa

Related projects ⓘ

Alternatives and complementary repositories for fpa

• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 3 years ago
• VGP / vgp-tools
  ☆28Updated last year
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆31Updated last month
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆27Updated last week
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated this week
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 3 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 weeks ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆20Updated 8 months ago
• lh3 / gffio
  ☆32Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆39Updated 4 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 3 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆15Updated 7 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆35Updated 11 months ago
• jts / mbtools
  ☆13Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 3 months ago
• fawaz-dabbaghieh / bubble_gun
  ☆39Updated this week
• PacificBiosciences / actc
  Align subreads to ccs reads
  ☆13Updated last year
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆24Updated last week
• bede / kindel
  Indel-aware consensus from aligned BAMs
  ☆20Updated last year
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆30Updated 2 weeks ago
• kcleal / svbench
  Benchmark structural variant calls against a reference set
  ☆17Updated 3 weeks ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 6 months ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 2 years ago