natir / fpaLinks
Filter of Pairwise Alignement
☆44Updated 3 years ago
Alternatives and similar repositories for fpa
Users that are interested in fpa are comparing it to the libraries listed below
Sorting:
- ☆28Updated 6 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- ☆32Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Extracts subgraphs or components from a graph in GFA format☆25Updated 11 months ago
- ☆45Updated 2 weeks ago
- Find Unique genomic Regions☆30Updated this week
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Differential k-mer analysis☆37Updated last year
- General purpose utility related to GAF files☆29Updated last month
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Generate interactive dotplot from mummer4 output using plotly☆27Updated 5 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 3 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated this week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated last month
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 7 months ago
- GBWT-based handle graph☆31Updated last week