Flavia95 / VGpopLinks
Population genetics analysis on VG
☆16Updated 4 years ago
Alternatives and similar repositories for VGpop
Users that are interested in VGpop are comparing it to the libraries listed below
Sorting:
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Pangenome Graph Variation Format (PGVF)☆20Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated last month
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- ☆41Updated this week
- Long-read aligner to pangenome graphs☆26Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 8 months ago
- General purpose utility related to GAF files☆29Updated this week
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆16Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Convert HAL to VG☆22Updated last year
- GBWT-based handle graph☆31Updated last month
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆14Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 8 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Updated 4 months ago
- ☆16Updated 2 years ago
- ☆28Updated 4 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- ☆26Updated 4 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated 7 months ago