Flavia95 / VGpopLinks
Population genetics analysis on VG
☆16Updated 4 years ago
Alternatives and similar repositories for VGpop
Users that are interested in VGpop are comparing it to the libraries listed below
Sorting:
- Pangenome Graph Variation Format (PGVF)☆19Updated 5 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆17Updated 9 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- GBWT-based handle graph☆31Updated this week
- ☆17Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆26Updated 3 weeks ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Long-read aligner to pangenome graphs☆28Updated last year
- Convert HAL to VG☆23Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- General purpose utility related to GAF files☆29Updated 3 weeks ago
- ☆28Updated 7 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- ☆14Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated last year
- ☆40Updated 3 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆23Updated 2 weeks ago
- Hidden Markov Model based Copy number caller☆20Updated last year
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 3 months ago
- ☆24Updated 3 months ago
- ☆16Updated 3 years ago
- ☆26Updated 3 months ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago