Population genetics analysis on VG
☆17Apr 22, 2021Updated 4 years ago
Alternatives and similar repositories for VGpop
Users that are interested in VGpop are comparing it to the libraries listed below
Sorting:
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- extract MSAs from genome variation graphs☆34Mar 3, 2026Updated 2 weeks ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- ☆41Feb 15, 2026Updated last month
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- ☆28Sep 28, 2024Updated last year
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Apr 15, 2020Updated 5 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- ☆19May 10, 2023Updated 2 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆15Mar 9, 2018Updated 8 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 8 months ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- ☆46Jun 21, 2020Updated 5 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 11 months ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- ☆21Nov 1, 2019Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- ☆29Aug 7, 2025Updated 7 months ago