esrice / hic-pipeline
A pipeline for scaffolding a genome assembly using Hi-C
☆13Updated 2 years ago
Alternatives and similar repositories for hic-pipeline:
Users that are interested in hic-pipeline are comparing it to the libraries listed below
- A Hi-C scaffolding method☆23Updated 3 years ago
- plot genome alignment synteny☆21Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- Genome alignment and synteny plots☆30Updated last year
- ☆12Updated 2 years ago
- ☆24Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- Fast and frugal disk based k-mer counter☆14Updated 4 years ago
- A box of genomics tools☆21Updated 4 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 11 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- ☆27Updated 2 weeks ago
- ☆35Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo …☆13Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- ☆29Updated 3 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- ☆16Updated 6 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆11Updated last year
- ☆30Updated 5 years ago
- ☆15Updated 2 years ago