esrice / hic-pipeline
A pipeline for scaffolding a genome assembly using Hi-C
☆13Updated 2 years ago
Alternatives and similar repositories for hic-pipeline:
Users that are interested in hic-pipeline are comparing it to the libraries listed below
- ☆12Updated 2 years ago
- ☆16Updated 5 months ago
- Fast and frugal disk based k-mer counter☆14Updated 4 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- ☆30Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Genome alignment and synteny plots☆29Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆24Updated last week
- ☆27Updated 3 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- ☆24Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Multi-genome synteny block visualization tool☆32Updated 2 months ago
- Toolkit for evolutionary analyses of linkage groups☆28Updated 8 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Yet another Hi-C scaffolding tool☆19Updated 5 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 10 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- ☆22Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- Draw a dot plot from a paf alignment☆26Updated 3 months ago
- plot genome alignment synteny☆21Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year