parallelLastz: Running Lastz in parallel
☆17Sep 13, 2024Updated last year
Alternatives and similar repositories for parallelLastz
Users that are interested in parallelLastz are comparing it to the libraries listed below
Sorting:
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22May 20, 2024Updated last year
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 8 months ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- ☆12Feb 16, 2025Updated last year
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated 3 weeks ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Jul 11, 2020Updated 5 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- ☆13Nov 15, 2017Updated 8 years ago
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Sep 9, 2021Updated 4 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Dec 2, 2022Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 8 months ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- ☆27Aug 29, 2025Updated 6 months ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 9 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 7 years ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Sep 19, 2024Updated last year
- Tools for working with agp files☆19Jun 26, 2025Updated 8 months ago
- a Sequencing Quality Assessment Tool☆17Jul 28, 2022Updated 3 years ago
- ☆17Oct 21, 2024Updated last year
- ☆15Aug 6, 2018Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Updated this week
- ☆44May 8, 2024Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Jul 11, 2025Updated 7 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- ☆86Jul 12, 2024Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- Complete assemblies of non-human primate genomes☆56May 20, 2025Updated 9 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 7 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Nov 21, 2019Updated 6 years ago