jnarayan81 / parallelLastz
parallelLastz: Running Lastz in parallel
☆15Updated 5 months ago
Alternatives and similar repositories for parallelLastz:
Users that are interested in parallelLastz are comparing it to the libraries listed below
- Simple tools for working with Hi-C data☆16Updated 6 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 6 months ago
- Genome alignment and synteny plots☆27Updated last year
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- ☆12Updated 4 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆15Updated 3 weeks ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 3 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆12Updated 11 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆10Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- ☆15Updated 3 years ago
- Long Read Based SV Calling Tools Analysis☆12Updated 10 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 9 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆16Updated last week
- The MafFilter genome alignment processor☆17Updated 4 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 7 years ago
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆11Updated 5 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- a fork of the gap-closing pipeline PBJelly☆13Updated 6 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 4 months ago
- Construct and Analyze the North American Vitis pangenome☆22Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- plot genome alignment synteny☆20Updated 4 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 7 months ago