jnarayan81 / parallelLastz
parallelLastz: Running Lastz in parallel
☆15Updated 4 months ago
Alternatives and similar repositories for parallelLastz:
Users that are interested in parallelLastz are comparing it to the libraries listed below
- Genome alignment and synteny plots☆27Updated last year
- SINE annotation tool for plant genomes☆17Updated 11 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 5 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Simple tools for working with Hi-C data☆16Updated 6 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- ☆12Updated 4 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 3 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆15Updated last week
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆15Updated this week
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 8 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆12Updated 10 months ago
- The MafFilter genome alignment processor☆17Updated 4 months ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 6 months ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 3 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- ☆15Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated last month
- plot genome alignment synteny☆20Updated 4 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆12Updated 7 years ago
- ☆15Updated 3 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆12Updated 5 months ago
- Domain based annotation of transposable elements☆19Updated last month
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆10Updated 2 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- a fork of the gap-closing pipeline PBJelly☆13Updated 6 years ago