lh3 / treebestLinks
TreeBeST: Tree Building guided by Species Tree
☆14Updated 14 years ago
Alternatives and similar repositories for treebest
Users that are interested in treebest are comparing it to the libraries listed below
Sorting:
- A scaffold assembling pipeline for stLFR reads.☆15Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last week
- Gene copy number prediction from k-mer frequencies☆13Updated 10 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Standalone tool and library allowing to work with barcoded linked-reads☆12Updated 6 months ago
- ☆15Updated 7 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 6 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- A transposition caller.☆10Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- SV genotyping with long reads☆39Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆14Updated last year
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆15Updated 2 years ago