Alternatives and similar repositories for treebest:

Users that are interested in treebest are comparing it to the libraries listed below

• BGI-Qingdao / SLR-superscaffolder
  A scaffold assembling pipeline for stLFR reads.
  ☆15Updated 3 years ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 2 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 8 months ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆22Updated 3 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• RacconC / gtftools
  ☆13Updated last year
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆29Updated 4 years ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated 7 months ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 3 years ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 7 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 2 years ago
• Oshlack / necklace
  Combine reference and assembled transcriptomes for RNA-Seq analysis
  ☆20Updated 4 years ago
• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆17Updated 3 years ago
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 3 years ago
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 2 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 6 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆16Updated 5 years ago
• morispi / LRez
  Standalone tool and library allowing to work with barcoded linked-reads
  ☆12Updated last month
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆24Updated 4 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 7 years ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated last month
• fritzsedlazeck / sge_mummer
  Scripts to split reference and run mummer in parallel on an SGE cluster
  ☆11Updated 8 years ago
• ihh / gfftools
  Perl scripts for working with the GFF format
  ☆16Updated 13 years ago
• mchaisso / blasr
  This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…
  ☆21Updated 5 years ago
• UofABioinformaticsHub / shinyNgsreports
  The shiny app that accompanies the ngsReports R package
  ☆14Updated 3 years ago
• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated 2 years ago