lh3 / treebest
TreeBeST: Tree Building guided by Species Tree
☆14Updated 13 years ago
Related projects ⓘ
Alternatives and complementary repositories for treebest
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- fastq quality assessment and filtering tool☆18Updated last year
- A scaffold assembling pipeline for stLFR reads.☆15Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- transposable element typing pipeline☆16Updated 8 months ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆19Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- This is the Haplotypo repository☆20Updated 5 months ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Visualising discordant reads☆14Updated 9 years ago
- ☆28Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 7 months ago
- ☆15Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆21Updated 4 years ago
- FamDB file format library and utilities☆16Updated this week
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆20Updated 3 years ago