MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads
☆111Oct 2, 2020Updated 5 years ago
Alternatives and similar repositories for MECAT
Users that are interested in MECAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆71Apr 28, 2020Updated 6 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- A new algorithm for scaffolding☆10Sep 18, 2018Updated 7 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- Nanopore data assembler☆170Mar 27, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- Ultra-fast de novo assembler using long noisy reads☆137Feb 24, 2021Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- A single molecule sequence assembler for genomes large and small.☆703Jun 18, 2026Updated last month
- ☆78Dec 4, 2019Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆299May 9, 2024Updated 2 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆150Jun 23, 2026Updated last month
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 5 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- Fast and accurate de novo assembler for long reads☆405May 10, 2024Updated 2 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- ☆38Apr 13, 2024Updated 2 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Structural Variants Pipeline for Long Reads☆45Jul 17, 2018Updated 8 years ago
- test repository☆29Jul 6, 2023Updated 3 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆356Jul 19, 2025Updated last year
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Aug 27, 2018Updated 7 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆945Apr 3, 2026Updated 3 months ago
- The MARVEL assembler☆80Jul 7, 2023Updated 3 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago