TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
☆23Jun 17, 2024Updated 2 years ago
Alternatives and similar repositories for TideHunter
Users that are interested in TideHunter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- ☆13Jun 24, 2016Updated 10 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆37Mar 4, 2026Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- a Semi-automated pipeline for assembling T2T genome☆30Oct 16, 2025Updated last year
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 3 months ago
- ☆15Nov 25, 2019Updated 6 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- ☆12Jun 7, 2024Updated 2 years ago
- The tool is employed for the visualisation of genome-wide contact heatmaps.☆14Apr 14, 2025Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆70May 22, 2021Updated 5 years ago
- A program to call variants from genome alignment☆84Apr 29, 2025Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- assembly evaluation tool☆36May 11, 2022Updated 4 years ago
- A universal genomic coordinate translator for comparative genomics☆12Jul 6, 2017Updated 9 years ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- RepeatIdentifier☆76Mar 19, 2025Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆56Apr 1, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆59Oct 9, 2026Updated 3 weeks ago
- haplotypic duplication identification tool☆298Oct 30, 2025Updated last year
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 6 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆14Mar 11, 2019Updated 7 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆23Apr 29, 2024Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- ☆16Oct 8, 2026Updated 3 weeks ago
- 🪡Correct and scaffold assemblies using long reads☆62Apr 1, 2026Updated 6 months ago
- ☆10Jun 9, 2020Updated 6 years ago