use long sequenced reads to close gaps in assemblies
☆40Sep 4, 2018Updated 7 years ago
Alternatives and similar repositories for LR_Gapcloser
Users that are interested in LR_Gapcloser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A gap-closing software tool that uses long reads to enhance genome assembly.☆239Sep 6, 2024Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 4 months ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Dynamic Elongation of a Genome Assembly Path☆25Apr 29, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆269Jan 5, 2026Updated 4 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆52May 2, 2026Updated 3 weeks ago
- ☆16Jul 25, 2021Updated 4 years ago
- ☆27May 12, 2026Updated 2 weeks ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆172Oct 29, 2025Updated 6 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215May 12, 2026Updated 2 weeks ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Telomere compliment tools☆26Nov 17, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆78Jun 12, 2020Updated 5 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- ☆10Jun 9, 2020Updated 5 years ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆164Nov 4, 2025Updated 6 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- ☆32Apr 7, 2025Updated last year
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆391Apr 22, 2026Updated last month
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆31Apr 2, 2026Updated last month
- Repeat-aware polishing genomes assembled using HiFi long reads☆102Apr 7, 2026Updated last month
- Identify and find telomeres, or telomeric repeats in a genome.☆164Nov 24, 2025Updated 6 months ago
- k-mer based assembly evaluation☆343Updated this week
- ☆23Feb 26, 2026Updated 3 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆154Updated this week
- ☆71Apr 28, 2020Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Apr 10, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nanopore data assembler☆168Mar 27, 2022Updated 4 years ago
- Yet another k-mer analyzer☆172Dec 30, 2025Updated 4 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆31Nov 9, 2025Updated 6 months ago
- haplotypic duplication identification tool☆286Oct 30, 2025Updated 6 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Genome annotation pre-publication results☆30Updated this week
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆26Mar 27, 2026Updated last month