CAFS-bioinformatics / LR_Gapcloser
use long sequenced reads to close gaps in assemblies
☆36Updated 6 years ago
Alternatives and similar repositories for LR_Gapcloser:
Users that are interested in LR_Gapcloser are comparing it to the libraries listed below
- ☆29Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Genome Annotation Pipeline☆35Updated 5 months ago
- ☆38Updated last year
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆29Updated 2 months ago
- TGS scaffolding☆46Updated 3 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- Centromics: visualing centromeres with multiple omics data☆17Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 7 months ago
- HiCAT new project☆27Updated last year
- Automated pipeline for running CoalHMM☆12Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 2 months ago
- A tool for evaluate long-read de novo assembly results☆43Updated 5 months ago
- ☆20Updated 6 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- Identification of transposable element families from pangenome polymorphisms☆44Updated 6 months ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆24Updated 2 weeks ago
- ☆28Updated 5 months ago
- ☆43Updated 8 years ago
- ☆15Updated 2 months ago
- ☆25Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated 4 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆46Updated last year
- A organelle de novo genome assembly toolkit☆53Updated 2 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated last month