use long sequenced reads to close gaps in assemblies
☆41Sep 4, 2018Updated 7 years ago
Alternatives and similar repositories for LR_Gapcloser
Users that are interested in LR_Gapcloser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- a gap-filling tools of genome in complex region.☆25Dec 30, 2025Updated 2 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Dynamic Elongation of a Genome Assembly Path☆25Feb 25, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆255Jan 5, 2026Updated 2 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Feb 9, 2026Updated last month
- ☆16Jul 25, 2021Updated 4 years ago
- ☆23Dec 8, 2025Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆33Jan 3, 2022Updated 4 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆166Oct 29, 2025Updated 4 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated 2 weeks ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Telomere compliment tools☆28Nov 17, 2025Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆78Jun 12, 2020Updated 5 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- ☆10Jun 9, 2020Updated 5 years ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆162Nov 4, 2025Updated 4 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- ☆31Apr 7, 2025Updated 11 months ago
- Fast and accurately polish the genome generated by long reads.☆241Jan 9, 2025Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆384Mar 11, 2026Updated 2 weeks ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Jan 17, 2024Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆160Nov 24, 2025Updated 4 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 4 months ago
- k-mer based assembly evaluation☆340Jun 28, 2024Updated last year
- ☆22Feb 26, 2026Updated last month
- Evaluation and polishing workflows for T2T genome assemblies☆148Jul 7, 2025Updated 8 months ago
- ☆71Apr 28, 2020Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Yet another k-mer analyzer☆162Dec 30, 2025Updated 2 months ago
- Nanopore data assembler☆166Mar 27, 2022Updated 3 years ago
- haplotypic duplication identification tool☆277Oct 30, 2025Updated 4 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆31Nov 9, 2025Updated 4 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Genome annotation pre-publication results☆26Mar 19, 2026Updated last week
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆26Mar 6, 2026Updated 2 weeks ago