jydu / maffilterLinks
The MafFilter genome alignment processor
☆19Updated 4 months ago
Alternatives and similar repositories for maffilter
Users that are interested in maffilter are comparing it to the libraries listed below
Sorting:
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 6 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆21Updated 2 weeks ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆28Updated last year
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- Programs implementing the trio-binning genome assembly method☆18Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated this week
- FastK based version of Merqury☆28Updated 3 months ago
- Identification of conserved non-coding sequences in plants☆22Updated last week
- TD2☆17Updated 3 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Updated last year
- Convert HAL to VG☆22Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago