jydu / maffilterLinks
The MafFilter genome alignment processor
☆19Updated 6 months ago
Alternatives and similar repositories for maffilter
Users that are interested in maffilter are comparing it to the libraries listed below
Sorting:
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 3 months ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆28Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- FastK based version of Merqury☆28Updated 2 months ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- TD2☆25Updated last week
- COsine SImilarity-based Genotyper using pangenomes☆23Updated last week
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆30Updated 5 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Phasing reads with secondary alignments☆21Updated last year
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last month
- ☆31Updated 6 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- Consensus genome annotation using OMA☆27Updated 5 months ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 2 months ago