jydu / maffilterView external linksLinks
The MafFilter genome alignment processor
☆19Jan 6, 2026Updated last month
Alternatives and similar repositories for maffilter
Users that are interested in maffilter are comparing it to the libraries listed below
Sorting:
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Mar 1, 2024Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated 2 weeks ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last week
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated 11 months ago
- Reference bias measuring toolkit☆20Apr 18, 2025Updated 9 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Mar 27, 2019Updated 6 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Feb 4, 2026Updated last week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 7 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 9 months ago
- ☆17Mar 2, 2024Updated last year
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- extract MSAs from genome variation graphs☆34Sep 20, 2020Updated 5 years ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆122Jun 3, 2025Updated 8 months ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 3 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆184Oct 15, 2025Updated 3 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 2 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- chloroplast genome assembly using long reads data☆14Jul 8, 2025Updated 7 months ago
- Hierarchical Alignment Format☆174Jan 23, 2026Updated 3 weeks ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Jan 17, 2024Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Nov 14, 2025Updated 3 months ago
- Any Way to Show Multi genomic Synteny☆217Jul 4, 2025Updated 7 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆60Mar 29, 2023Updated 2 years ago