maxplanck-ie / HiCAssembler
Software to assemble contigs/scaffolds into chromosomes using Hi-C data
☆28Updated 4 months ago
Alternatives and similar repositories for HiCAssembler:
Users that are interested in HiCAssembler are comparing it to the libraries listed below
- ☆12Updated 4 years ago
- Genomic Association Tester☆30Updated last year
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 3 years ago
- ☆35Updated 5 years ago
- ☆16Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated this week
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 10 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 5 months ago
- Structural Variant Prediction Viewer☆33Updated 7 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Evolutionary Transcriptomics with R☆41Updated this week
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 5 months ago
- ☆22Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆21Updated last month
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- ☆33Updated last year
- Personal diploid genome creation and coordinate conversion☆23Updated last week
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆29Updated 2 months ago
- ☆17Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated 2 years ago
- ☆20Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago