maxplanck-ie / HiCAssemblerLinks
Software to assemble contigs/scaffolds into chromosomes using Hi-C data
☆28Updated last year
Alternatives and similar repositories for HiCAssembler
Users that are interested in HiCAssembler are comparing it to the libraries listed below
Sorting:
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Adapters for trimming☆30Updated 6 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 4 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- ☆23Updated 11 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Genomic Association Tester☆33Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 7 months ago
- Blazing fast toolkit to work with .hic and .cool files☆41Updated last week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- ☆37Updated 6 years ago
- ☆51Updated 6 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- for visual evaluation of read support for structural variation☆55Updated last year
- A software for calculating telomere length☆72Updated 7 years ago
- Evolutionary Transcriptomics with R☆49Updated this week
- ☆12Updated 5 years ago
- ☆25Updated 7 months ago
- Long read to rMATS☆32Updated 2 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 4 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated 2 months ago