maxplanck-ie / HiCAssemblerLinks
Software to assemble contigs/scaffolds into chromosomes using Hi-C data
☆29Updated 11 months ago
Alternatives and similar repositories for HiCAssembler
Users that are interested in HiCAssembler are comparing it to the libraries listed below
Sorting:
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆23Updated 8 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- ☆51Updated 6 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 11 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- ☆19Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated 3 weeks ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- Personal diploid genome creation and coordinate conversion☆30Updated 4 months ago
- ☆36Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- Genomic Association Tester☆31Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago