ktan8 / nanopore_telomere_basecallLinks
☆14Updated 2 years ago
Alternatives and similar repositories for nanopore_telomere_basecall
Users that are interested in nanopore_telomere_basecall are comparing it to the libraries listed below
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
 - ☆10Updated 5 years ago
 - Gene copy number prediction from k-mer frequencies☆14Updated last year
 - ☆16Updated 3 years ago
 - A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
 - interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
 - A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
 - ☆13Updated 5 months ago
 - Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
 - Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 10 months ago
 - ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 11 months ago
 - MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
 - ☆10Updated 5 years ago
 - Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 3 months ago
 - ☆12Updated last year
 - Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
 - ☆16Updated 4 years ago
 - Consensus genome annotation using OMA☆27Updated 4 months ago
 - Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
 - Efficient indexing and querying of annotations in a pangenome graph☆10Updated 4 months ago
 - Benchmarking variant calling in polyploids☆15Updated 3 years ago
 - PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 2 months ago
 - Phasing reads with secondary alignments☆21Updated 11 months ago
 - Kmer based genotyper for short reads.☆23Updated 4 years ago
 - ☆26Updated 4 years ago
 - ☆22Updated last month
 - A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
 - Prefix-renaming FASTA records really fast.☆16Updated last year
 - a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
 - A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago