njdbickhart / GoatAssemblyScriptsLinks
A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
☆11Updated 8 years ago
Alternatives and similar repositories for GoatAssemblyScripts
Users that are interested in GoatAssemblyScripts are comparing it to the libraries listed below
Sorting:
- ☆15Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- The MafFilter genome alignment processor☆18Updated 3 weeks ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- parallelLastz: Running Lastz in parallel☆16Updated 8 months ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Identification of conserved non-coding sequences in plants☆17Updated last month
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 8 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆15Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- ☆15Updated 5 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Long Read Based SV Calling Tools Analysis☆13Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Phasing reads with secondary alignments☆18Updated 6 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆9Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- Characterization of Structural Variation in Chinese samples☆18Updated 3 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- a fork of the gap-closing pipeline PBJelly☆14Updated 6 years ago
- Gene copy number prediction from k-mer frequencies☆13Updated 10 months ago