A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
☆11Feb 28, 2017Updated 9 years ago
Alternatives and similar repositories for GoatAssemblyScripts
Users that are interested in GoatAssemblyScripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Apr 9, 2021Updated 5 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13May 29, 2020Updated 6 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆23Dec 6, 2018Updated 7 years ago
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆15Feb 22, 2022Updated 4 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 5 months ago
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 5 years ago
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆12May 19, 2019Updated 7 years ago
- ☆15Aug 6, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Useful bioinformatic scripts☆60Feb 23, 2026Updated 6 months ago
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 8 years ago
- ☆59Dec 12, 2023Updated 2 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Same species annotation lift over pipeline.☆99Jul 21, 2023Updated 3 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts of population genomics analysis☆36May 8, 2018Updated 8 years ago
- The MafFilter genome alignment processor