shuzhangcourage / HiC-data-analysis
General analysis of HiC data, including compartment A/B, domains and loops.
☆11Updated 2 years ago
Alternatives and similar repositories for HiC-data-analysis:
Users that are interested in HiC-data-analysis are comparing it to the libraries listed below
- ☆11Updated 5 years ago
- an efficient Hi-C data processing pipeline☆16Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆18Updated 5 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆14Updated 9 months ago
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- ☆14Updated 7 years ago
- The cattle Genotype-Tissue Expression atlas v1☆24Updated 2 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆23Updated 4 months ago
- ☆15Updated 2 years ago
- ☆19Updated 8 months ago
- ☆16Updated 4 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated 7 months ago
- ☆23Updated 2 years ago
- ☆37Updated 5 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- ☆18Updated 2 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Updated 2 years ago
- ☆14Updated last year
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- ☆10Updated 4 years ago
- ☆18Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆21Updated last month
- Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis☆7Updated 5 years ago
- ☆22Updated last year
- ☆15Updated 4 years ago
- 4C-seq processing pipeline☆23Updated last month
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago