Alternatives and similar repositories for HiC-data-analysis

Users that are interested in HiC-data-analysis are comparing it to the libraries listed below

• zhongmicai / Hic_tools_collection
  ☆12Updated 5 years ago
• ChenFengling / HiCpipe
  an efficient Hi-C data processing pipeline
  ☆17Updated last year
• LappalainenLab / lorals_paper_code
  ☆26Updated 3 years ago
• ma-compbio / Phylo-HMRF
  ☆16Updated 4 years ago
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 3 years ago
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆24Updated 2 years ago
• dixonlab / hic_breakfinder
  ☆37Updated 5 years ago
• mortazavilab / cerberus
  ☆19Updated 11 months ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 5 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆19Updated 5 years ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆22Updated last week
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated 10 months ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆15Updated last month
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆25Updated 7 months ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆26Updated 2 years ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 3 months ago
• XiaoTaoWang / domaincaller
  A Python implementation of the original DI domain caller
  ☆12Updated 4 years ago
• mirnylab / hiclib-legacy
  A legacy repository. Was replaced by distiller, cooler, and cooltools.
  ☆20Updated 5 years ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• zyndagj / BSMAPz
  Updated and optimized fork of BSMAP
  ☆22Updated 4 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last week
• liangfan01 / pipeline-for-isoseq
  ☆14Updated 7 years ago
• Zhong-Lab-UCSD / HiCtool
  Python library for processing and visualizing Hi-C data
  ☆20Updated 5 years ago
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆46Updated 2 years ago
• junjunlab / GetTransTool
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆21Updated 3 years ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆44Updated 2 years ago
• plantformatics / Socrates
  ☆21Updated 4 months ago