Alternatives and similar repositories for HiC-data-analysis

Users that are interested in HiC-data-analysis are comparing it to the libraries listed below

• zhongmicai / Hic_tools_collection
  ☆12Updated 6 years ago
• ChenFengling / HiCpipe
  an efficient Hi-C data processing pipeline
  ☆17Updated last year
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• mortazavilab / cerberus
  ☆19Updated last year
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆24Updated 3 years ago
• ma-compbio / Phylo-HMRF
  ☆17Updated 4 years ago
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 3 years ago
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆19Updated 5 years ago
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated last year
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 5 years ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆16Updated 4 months ago
• mirnylab / hiclib-legacy
  A legacy repository. Was replaced by distiller, cooler, and cooltools.
  ☆21Updated 5 years ago
• dozmorovlab / multiHiCcompare
  Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.
  ☆10Updated 3 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆15Updated last year
• liangfan01 / pipeline-for-isoseq
  ☆14Updated 7 years ago
• RitchieLabIGH / IRFinder
  ☆18Updated 2 years ago
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆27Updated 2 years ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆22Updated 6 years ago
• FemeniasM / ExplorATEproject
  R package to explore active transposable elements with RNA-seq data
  ☆21Updated 2 years ago
• jkimlab / msPIPE
  ☆19Updated 2 years ago
• YutingPKU / AnalysisPipeline-NGS
  ☆12Updated 4 years ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• hanlinqian / IntegrativeNetworkMap
  ☆23Updated 3 years ago
• XiaoTaoWang / domaincaller
  A Python implementation of the original DI domain caller
  ☆12Updated 5 years ago
• junjunlab / GetTransTool
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆20Updated 3 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆44Updated 3 months ago