slimsuite / buscompLinks
BUSCOMP: BUSCO Compiler and Comparison tool
☆21Updated last year
Alternatives and similar repositories for buscomp
Users that are interested in buscomp are comparing it to the libraries listed below
Sorting:
- A nextflow pipeline for polishing CLR assemblies☆18Updated 3 years ago
- Improved long-read assembly by preserving contained reads☆30Updated last year
- Yet another Hi-C scaffolding tool☆22Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 4 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Domain based annotation of transposable elements☆21Updated 4 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated 3 weeks ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Diploid genome assembly analysis tools☆14Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆38Updated 3 months ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 3 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated 3 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 2 weeks ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12Updated 2 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 6 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated last week