☆14Mar 13, 2018Updated 8 years ago
Alternatives and similar repositories for pipeline-for-isoseq
Users that are interested in pipeline-for-isoseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline for isoseq☆23Jun 8, 2018Updated 7 years ago
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆22Jun 5, 2018Updated 7 years ago
- ☆22Aug 11, 2020Updated 5 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆279Sep 26, 2023Updated 2 years ago
- An automated pipeline for processing DamID sequencing datasets☆16Aug 28, 2025Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 7 years ago
- Long read to rMATS☆32May 5, 2023Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Apr 23, 2020Updated 5 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 8 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Long-read Isoform Quantification and Analysis☆38Mar 25, 2025Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Aug 27, 2018Updated 7 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆234Jul 9, 2025Updated 9 months ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 7 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Aug 28, 2015Updated 10 years ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated last year
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆32Jul 20, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated 9 months ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 2 years ago
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- Robust Open Reading Frame prediction (ANGLE re-implementation)☆16Aug 2, 2021Updated 4 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆157Jan 25, 2024Updated 2 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Derives consensus sequences from a set of long noisy reads by clustering and error correction.☆16Jul 20, 2021Updated 4 years ago
- Structural variant caller for low-depth long-read sequencing data☆48Feb 5, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ENCODE long read RNA-seq pipeline☆51Jan 9, 2023Updated 3 years ago
- ☆11Jun 23, 2017Updated 8 years ago
- gghic makes visualization of Hi-C/-like data easily in R☆27Jan 23, 2026Updated 2 months ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- Mutual nearest neighbor graphs for population structure inference and visualization☆18Dec 4, 2025Updated 4 months ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Mar 8, 2023Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago