liangfan01 / pipeline-for-isoseqLinks
☆14Updated 7 years ago
Alternatives and similar repositories for pipeline-for-isoseq
Users that are interested in pipeline-for-isoseq are comparing it to the libraries listed below
Sorting:
- A pipeline for isoseq☆23Updated 7 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Long read to rMATS☆32Updated 2 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- iTAK☆42Updated last year
- ☆15Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 months ago
- lncRNA-screen☆25Updated 8 years ago
- ☆22Updated 6 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- ☆21Updated 2 years ago
- ☆19Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- Plant small RNA target prediction tool☆26Updated 8 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 7 months ago
- MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapp…☆18Updated 3 years ago
- ☆15Updated 3 years ago
- ☆36Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Updated 5 years ago
- fastx-utils using klib☆19Updated 5 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 5 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- circos pipeline☆20Updated 4 years ago
- Structural variant merging tool☆54Updated last year