liangfan01 / pipeline-for-isoseqLinks
☆14Updated 7 years ago
Alternatives and similar repositories for pipeline-for-isoseq
Users that are interested in pipeline-for-isoseq are comparing it to the libraries listed below
Sorting:
- A pipeline for isoseq☆23Updated 7 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- ☆21Updated 3 years ago
- iTAK☆43Updated last year
- ☆22Updated 6 years ago
- ☆20Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- ☆17Updated 4 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- Plant small RNA target prediction tool☆26Updated 8 years ago
- ☆15Updated 5 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- ☆15Updated 3 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19Updated 3 years ago
- fastx-utils using klib☆20Updated 5 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆17Updated 3 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆13Updated 2 years ago
- lncRNA-screen☆25Updated 8 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- Scripts for NGS processing☆17Updated 8 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Invertory of TE-gene isoforms☆13Updated 2 years ago