The repository for codes developed to generated the Maize NC358 assemblies and analyses.
☆10Apr 23, 2020Updated 6 years ago
Alternatives and similar repositories for Maize_NC358
Users that are interested in Maize_NC358 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated 11 months ago
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated 11 months ago
- ☆35Dec 24, 2020Updated 5 years ago
- Creates an N-chart for comparing assembly lengths, including script for counting assembly lengths from a fasta file☆13Feb 2, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆18Dec 19, 2023Updated 2 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 2 months ago
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆14Oct 10, 2022Updated 3 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13Jan 26, 2026Updated 3 months ago
- A set of command line tools based on R and JavaScript.☆17Apr 21, 2020Updated 6 years ago
- ☆78Jun 12, 2020Updated 5 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Parse command-line arguments and simple variable interpolation☆17Feb 6, 2026Updated 2 months ago
- A script for comparing old vs new versions of genome annotations☆22Aug 1, 2023Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- ☆16Jul 29, 2023Updated 2 years ago
- ☆15Nov 11, 2019Updated 6 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- ☆14Mar 13, 2018Updated 8 years ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Jan 26, 2023Updated 3 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- GWAS genetics Fine-mapping method☆17May 17, 2024Updated last year
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆85Feb 15, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- chloroplast genome assembly using long reads data☆16Jul 8, 2025Updated 9 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 7 months ago
- De novo annotation of young retrotransposons☆47Apr 24, 2026Updated last week
- ATAC-seq lab for BIOINF525☆10Mar 31, 2016Updated 10 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Genomic related tools☆76Nov 13, 2021Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆27Aug 19, 2025Updated 8 months ago