HuffordLab / Maize_NC358Links
The repository for codes developed to generated the Maize NC358 assemblies and analyses.
☆10Updated 5 years ago
Alternatives and similar repositories for Maize_NC358
Users that are interested in Maize_NC358 are comparing it to the libraries listed below
Sorting:
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- ☆29Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- ☆44Updated last year
- ☆16Updated 6 years ago
- B73Ab10 genome assembly methods☆16Updated 4 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- Scripts that used in our chicken T2T manuscript.☆22Updated 3 weeks ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- ☆21Updated 3 years ago
- ☆27Updated 2 years ago
- ☆28Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆32Updated last year
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- The tools are used for displaying hic signal of genome☆24Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- ☆23Updated 7 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆32Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 3 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- ☆31Updated 6 years ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- ☆44Updated 6 months ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago