pangenome / HPRCyear1v2genbankView external linksLinks
building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
☆15Feb 13, 2023Updated 3 years ago
Alternatives and similar repositories for HPRCyear1v2genbank
Users that are interested in HPRCyear1v2genbank are comparing it to the libraries listed below
Sorting:
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 5 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Jun 12, 2025Updated 8 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- ☆15Jun 29, 2021Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Jun 9, 2022Updated 3 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- ☆12Mar 3, 2023Updated 2 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- ☆71Sep 24, 2024Updated last year
- WDL’s and Dockerfiles for assembly QC process☆72Jul 26, 2025Updated 6 months ago
- ☆44May 8, 2024Updated last year
- A toolkit for exploring regions of variation in pangenomes☆14Updated this week
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 2 years ago
- alignment to variation graph inducer☆157Jan 20, 2026Updated 3 weeks ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- ☆29Mar 27, 2024Updated last year
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 2 years ago
- AlfaPang builds pangenome graphs without alignments or references.☆15Nov 7, 2025Updated 3 months ago
- ☆16Aug 8, 2025Updated 6 months ago
- A multiscale pangenome browser☆28Dec 19, 2025Updated last month
- Powerful long read aligner for Ruby☆14Feb 5, 2026Updated last week
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆25Aug 17, 2024Updated last year
- Code for building and testing variant ranking strategies☆17Aug 22, 2025Updated 5 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Sep 6, 2025Updated 5 months ago
- Show pangenome graphs in an easy way☆58Aug 7, 2025Updated 6 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Oct 29, 2025Updated 3 months ago
- A tool to find and visualize rearrangements in DNA sequences☆16Sep 16, 2019Updated 6 years ago
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 8 years ago
- extract MSAs from genome variation graphs☆34Sep 20, 2020Updated 5 years ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆104Nov 20, 2025Updated 2 months ago
- ☆61Jun 14, 2021Updated 4 years ago