pangenome / HPRCyear1v2genbankLinks
building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
☆14Updated 2 years ago
Alternatives and similar repositories for HPRCyear1v2genbank
Users that are interested in HPRCyear1v2genbank are comparing it to the libraries listed below
Sorting:
- ☆31Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆29Updated 5 months ago
- ☆43Updated last year
- SV calling for diploid assemblies☆29Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆42Updated 11 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- ☆36Updated 3 months ago
- ☆38Updated 2 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆31Updated 10 months ago
- Draw a dot plot from a paf alignment☆35Updated 2 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆22Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆41Updated 5 months ago
- ☆38Updated last month
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 2 weeks ago
- ☆29Updated 7 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 3 years ago