building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
☆15Feb 13, 2023Updated 3 years ago
Alternatives and similar repositories for HPRCyear1v2genbank
Users that are interested in HPRCyear1v2genbank are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- ☆15Jun 29, 2021Updated 4 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 7 months ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 9 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- alignment to variation graph inducer☆158Updated this week
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 3 years ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- WDL’s and Dockerfiles for assembly QC process☆72Jul 26, 2025Updated 8 months ago
- AlfaPang builds pangenome graphs without alignments or references.☆15Nov 7, 2025Updated 4 months ago
- ☆30Mar 27, 2024Updated 2 years ago
- Reference bias measuring toolkit☆20Mar 12, 2026Updated 2 weeks ago
- extract MSAs from genome variation graphs☆34Updated this week
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆27Jan 25, 2021Updated 5 years ago
- ☆73Sep 24, 2024Updated last year
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- ☆16Aug 8, 2025Updated 7 months ago
- ☆18Jan 29, 2025Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆104Nov 20, 2025Updated 4 months ago
- A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file☆20Oct 26, 2020Updated 5 years ago
- Assemblies from HPP Year 1 production☆80May 9, 2023Updated 2 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- A multiscale pangenome browser☆29Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Feb 16, 2026Updated last month
- ☆44May 8, 2024Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 10 months ago
- Show pangenome graphs in an easy way☆59Aug 7, 2025Updated 7 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Sep 6, 2025Updated 6 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆61Feb 25, 2026Updated last month