Alternatives and similar repositories for HPRCyear1v2genbank

Users that are interested in HPRCyear1v2genbank are comparing it to the libraries listed below

• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆29Updated last year
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 4 months ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆41Updated 11 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• vgteam / giraffe-sv-paper
  ☆43Updated last year
• baozg / phased-assembly-check
  ☆31Updated 9 months ago
• maickrau / ribotin
  ☆36Updated 3 months ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆34Updated last month
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• ablab / VerityMap
  ☆37Updated 2 years ago
• c-zhou / polyGembler
  ☆16Updated 3 years ago
• SandraLouise / SVJedi-graph
  SV genotyper for long reads with a variation graph
  ☆13Updated 2 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆32Updated 9 months ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• PengNi / ccsmethphase
  Methylatino phasing using PacBio CCS reads
  ☆13Updated 10 months ago
• human-pangenomics / hprc-tutorials
  ☆18Updated last year
• mrvollger / NucFreq
  ☆38Updated 3 weeks ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• shilpagarg / DipAsm
  ☆79Updated 5 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆25Updated 4 years ago
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 3 years ago
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆16Updated 4 years ago