pangenome / HPRCyear1v2genbankLinks
building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
☆14Updated 2 years ago
Alternatives and similar repositories for HPRCyear1v2genbank
Users that are interested in HPRCyear1v2genbank are comparing it to the libraries listed below
Sorting:
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- ☆17Updated last year
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 weeks ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆30Updated 5 years ago
- SV calling for diploid assemblies☆27Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆42Updated last year
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Combine structural variation outputs from long sequencing reads into a superior call set☆15Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- ☆35Updated last year
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- ☆35Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- the pangenome graph evaluator☆27Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- ☆35Updated this week
- ☆28Updated 8 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- SV genotyping with long reads☆39Updated last year