A machine learning-based genotyping tool for structural variation in short reads
☆27Sep 15, 2025Updated 11 months ago
Alternatives and similar repositories for svlearn
Users that are interested in svlearn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Mar 4, 2022Updated 4 years ago
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- Application of pan-genome for population☆121Oct 26, 2025Updated 10 months ago
- Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly☆40Apr 16, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆48Sep 22, 2025Updated 11 months ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆52Sep 22, 2025Updated 11 months ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- A tool for evaluating long-read de novo assembly results☆54Aug 25, 2024Updated 2 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆50Aug 5, 2026Updated 3 weeks ago
- Graph realignment tools for structural variants☆171Dec 8, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- ☆15May 3, 2023Updated 3 years ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆19Apr 1, 2024Updated 2 years ago
- MEGAnE☆34Sep 13, 2023Updated 2 years ago
- ☆32Nov 25, 2019Updated 6 years ago
- ☆52Sep 4, 2025Updated last year
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Mosaic Genome Assembler☆30Aug 11, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆42Jun 3, 2025Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Structural Variants ANnotator (SVAN)☆18Jun 27, 2026Updated 2 months ago
- personal genome constructor☆11May 29, 2025Updated last year
- classification of higher-order structural variants from breakpoint data☆11Jan 8, 2018Updated 8 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- Deep learning framework for SV calling and genotyping☆115Nov 8, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆27Aug 18, 2026Updated 2 weeks ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆118Jul 23, 2024Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month