A machine learning-based genotyping tool for structural variation in short reads
☆26Sep 15, 2025Updated 6 months ago
Alternatives and similar repositories for svlearn
Users that are interested in svlearn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Application of pan-genome for population☆116Oct 26, 2025Updated 5 months ago
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆38Jun 3, 2025Updated 9 months ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆46Sep 22, 2025Updated 6 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 6 months ago
- classification of higher-order structural variants from breakpoint data☆11Jan 8, 2018Updated 8 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 3 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 9 months ago
- Kmer Analysis of Pileups for Genotyping☆37Mar 6, 2026Updated 3 weeks ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆33Mar 17, 2026Updated last week
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 6 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- ☆51Sep 4, 2025Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 2 months ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 10 months ago
- Code for building and testing variant ranking strategies☆17Aug 22, 2025Updated 7 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Nov 25, 2024Updated last year
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.☆14Jan 28, 2026Updated last month
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- 一些用于画图的R脚本☆22Jan 8, 2026Updated 2 months ago
- This is the standalone version of the EviAnn pipeline☆142Mar 13, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆38Feb 15, 2025Updated last year
- Calculate the dn/ds (also pn and ps) value of cds☆13Jul 11, 2020Updated 5 years ago
- The cattle Genotype-Tissue Expression atlas v1☆28Mar 14, 2023Updated 3 years ago
- Figures for the CHM13 T2T SD paper.☆11Sep 12, 2021Updated 4 years ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆18Apr 1, 2024Updated last year
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago