Parsoa / NebulaLinks
Ultra-efficient mapping-free structural variation genotyper
☆20Updated 4 years ago
Alternatives and similar repositories for Nebula
Users that are interested in Nebula are comparing it to the libraries listed below
Sorting:
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 5 years ago
- Benchmark structural variant calls against a reference set☆18Updated last month
- Gene copy number prediction from k-mer frequencies☆14Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last month
- Population-wide Deletion Calling☆35Updated 8 months ago
- De-novo Assembly Structural Variant Caller☆13Updated 9 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- ☆16Updated 8 years ago
- ☆12Updated 4 years ago
- ☆20Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 4 years ago
- Tools for merging Tandem Repeat VCF files☆37Updated 8 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Updated 6 months ago
- Archived version 1.0.2☆16Updated 6 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- ☆20Updated 2 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago