Parsoa / NebulaLinks
Ultra-efficient mapping-free structural variation genotyper
☆19Updated 4 years ago
Alternatives and similar repositories for Nebula
Users that are interested in Nebula are comparing it to the libraries listed below
Sorting:
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Benchmark structural variant calls against a reference set☆17Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 5 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ☆12Updated 4 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 3 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- ☆16Updated 7 years ago
- ☆20Updated last year
- ☆31Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Non-parametric structural variant genotyper☆15Updated 4 years ago
- ☆32Updated 2 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- ☆16Updated 3 years ago
- ☆14Updated 2 years ago