Alternatives and similar repositories for Nebula

Users that are interested in Nebula are comparing it to the libraries listed below

• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆29Updated last year
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 4 years ago
• collaborativebioinformatics / GeneVar
  ☆12Updated 3 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• GP2code / CNV-Finder
  Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.
  ☆10Updated 5 months ago
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆26Updated 11 months ago
• zeeev / DASVC
  De-novo Assembly Structural Variant Caller
  ☆13Updated 8 years ago
• fritzsedlazeck / SURVIVOR_ant
  A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
  ☆13Updated 7 years ago
• benoukraflab / NanoVar---archived
  Archived version 1.0.2
  ☆16Updated 5 years ago
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 4 years ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated last month
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• mchaisso / mcutils
  ☆12Updated 2 weeks ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• KiddLab / QuicK-mer2
  ☆11Updated 2 years ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated last year
• kcleal / svbench
  Benchmark structural variant calls against a reference set
  ☆17Updated 6 months ago
• collaborativebioinformatics / nibSV
  ☆9Updated 3 years ago
• mcfrith / dnarrange
  ☆16Updated 3 months ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 6 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• AlgoLab / malva
  genotyping by Mapping-free ALternate-allele detection of known VAriants
  ☆10Updated 2 years ago
• ridgelab / Kmer-SSR
  Fast, Accurate, and Complete SSR Detection in Genomic Sequences
  ☆11Updated 4 years ago
• luntergroup / polyploid
  Benchmarking variant calling in polyploids
  ☆13Updated 3 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated 3 months ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 6 years ago
• fritzsedlazeck / sge_mummer
  Scripts to split reference and run mummer in parallel on an SGE cluster
  ☆11Updated 8 years ago
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 2 years ago