A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks
☆18Sep 9, 2021Updated 5 years ago
Alternatives and similar repositories for HiC-GNN
Users that are interested in HiC-GNN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 5 months ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Mar 22, 2023Updated 3 years ago
- ☆21Apr 23, 2024Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆12Dec 21, 2021Updated 4 years ago
- ☆13Jul 21, 2021Updated 5 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 3 months ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆44Apr 27, 2026Updated 6 months ago
- ☆11Aug 30, 2021Updated 5 years ago
- Illumina read substitution and indel error corrector. Processes human WGS 45x depth reads in about 4 hours, resulting in the reads qualit…☆10Sep 17, 2026Updated last month
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated 2 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 11 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 3D genome reconstruction with Lorentzian objective function☆10Nov 16, 2019Updated 6 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆26Jul 1, 2026Updated 4 months ago
- ☆11Feb 16, 2025Updated last year
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 4 years ago
- ☆78Jun 12, 2020Updated 6 years ago
- Reference-free quality assessment for Hi-C sequencing data☆13Apr 30, 2024Updated 2 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Poisson-based algorithm for stable inference of DNA Structure☆41Updated this week
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 3 years ago
- ☆15Aug 22, 2023Updated 3 years ago
- ☆11Oct 23, 2024Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆52Apr 12, 2019Updated 7 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 9 months ago
- ☆30Sep 9, 2025Updated last year
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An integrated package to process diploid Hi-C data☆18Dec 9, 2021Updated 4 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆23Dec 6, 2018Updated 7 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 8 months ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆11Feb 22, 2024Updated 2 years ago
- ☆12Aug 15, 2025Updated last year
- A graph neural network based approach to impute missing Hi-C reads.☆10Jul 28, 2023Updated 3 years ago