genotyping by Mapping-free ALternate-allele detection of known VAriants
☆10Mar 6, 2023Updated 3 years ago
Alternatives and similar repositories for malva
Users that are interested in malva are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Code for building and testing variant ranking strategies☆18Apr 13, 2026Updated 3 months ago
- ☆17Aug 8, 2025Updated 11 months ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆56Mar 7, 2025Updated last year
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- ☆14May 12, 2023Updated 3 years ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- modular k-mer count matrix and Bloom filter construction for large read collections☆89Jun 26, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Jun 9, 2020Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- TreeBeST: Tree Building guided by Species Tree☆14Feb 17, 2011Updated 15 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- ♥ Essential Functions for DNA Manipulation☆20Jun 15, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 6 years ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- ☆26Jul 1, 2026Updated 2 weeks ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 2 months ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆33Apr 19, 2020Updated 6 years ago
- Build haplotye and generate figures☆20Nov 4, 2025Updated 8 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated last year
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 11 months ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- HgvsGo is a program designed for analyzing "c." and "p." HGVS (Human Genome Variation Society) notations for single nucleotide variations…☆17Nov 20, 2024Updated last year
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- ☆15Jan 19, 2018Updated 8 years ago