AlgoLab / malvaLinks
genotyping by Mapping-free ALternate-allele detection of known VAriants
☆10Updated 2 years ago
Alternatives and similar repositories for malva
Users that are interested in malva are comparing it to the libraries listed below
Sorting:
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- ☆32Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated this week
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆16Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Targeted genotyper for complex polymorphic genes☆28Updated 2 weeks ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆35Updated 5 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 4 months ago