AlgoLab / malvaLinks
genotyping by Mapping-free ALternate-allele detection of known VAriants
☆10Updated 2 years ago
Alternatives and similar repositories for malva
Users that are interested in malva are comparing it to the libraries listed below
Sorting:
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Updated 2 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆35Updated 3 weeks ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 9 months ago
- ☆17Updated 4 years ago
- Benchmark structural variant calls against a reference set☆18Updated last month
- Differential k-mer analysis☆39Updated last year
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Archived version 1.0.2☆16Updated 6 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated last year
- ☆33Updated 3 years ago
- ☆16Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- ☆21Updated 6 years ago