dfguan / assetLinks
assembly evaluation tool
☆35Updated 3 years ago
Alternatives and similar repositories for asset
Users that are interested in asset are comparing it to the libraries listed below
Sorting:
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆37Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- Genome alignment and synteny plots☆30Updated 2 years ago
- SV calling for diploid assemblies☆28Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆25Updated 10 months ago
- ☆20Updated this week
- ☆30Updated 5 years ago
- FastK based version of Merqury☆26Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆40Updated 3 months ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- Statistics and analysis for variation graphs☆41Updated 7 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 4 months ago
- Draw a dot plot from a paf alignment☆30Updated 3 months ago
- TD2☆13Updated last month
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 7 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Ploidy agnostic phasing pipeline and algorithm☆46Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago