Alternatives and similar repositories for asset:

Users that are interested in asset are comparing it to the libraries listed below

• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆26Updated 6 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆22Updated this week
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 3 years ago
• mrvollger / NucFreq
  ☆35Updated 11 months ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆35Updated last month
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆39Updated 2 months ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 2 weeks ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• esrice / hic-pipeline
  A pipeline for scaffolding a genome assembly using Hi-C
  ☆12Updated 2 years ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆29Updated 3 years ago
• baozg / phased-assembly-check
  ☆29Updated last month
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆35Updated last year
• shelkmike / Mabs
  Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye
  ☆29Updated 2 months ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 4 years ago
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆13Updated last year
• ablab / VerityMap
  ☆34Updated last year
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆38Updated 4 months ago
• Zhuxitong / ppsPCP
  A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
  ☆26Updated 3 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last month
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 6 years ago
• ohdongha / OrthNet
  CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…
  ☆9Updated 2 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 4 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆39Updated last year
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year