ksahlin / IsoConLinks
Derives consensus sequences from a set of long noisy reads by clustering and error correction.
☆16Updated 4 years ago
Alternatives and similar repositories for IsoCon
Users that are interested in IsoCon are comparing it to the libraries listed below
Sorting:
- exploratory scripts for clustering ccs amplicon data☆11Updated 4 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- ☆26Updated 6 months ago
- WDL workflows for variant calling and assembly using ONT☆35Updated last week
- ☆47Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- ☆48Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- ☆35Updated last month
- PECAT, a phased error correct and assembly tool☆54Updated last month
- De novo clustering of long transcript reads into genes☆68Updated 4 months ago
- ☆49Updated 9 months ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆35Updated 3 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆76Updated 5 months ago
- Specifications for PacBio® native file formats☆31Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆41Updated last year
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- Structural variant caller for low-depth long-read sequencing data☆46Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- ☆32Updated 2 years ago
- FamDB file format library and utilities☆31Updated last week
- ☆31Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated this week
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆25Updated 3 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago