ksahlin / IsoConLinks
Derives consensus sequences from a set of long noisy reads by clustering and error correction.
☆16Updated 3 years ago
Alternatives and similar repositories for IsoCon
Users that are interested in IsoCon are comparing it to the libraries listed below
Sorting:
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆34Updated last month
- exploratory scripts for clustering ccs amplicon data☆11Updated 4 years ago
- Align subreads to ccs reads☆14Updated 2 weeks ago
- Convert HAL to VG☆22Updated 10 months ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- This is the Haplotypo repository☆20Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆29Updated last year
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆48Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- FamDB file format library and utilities☆27Updated 3 weeks ago
- PECAT, a phased error correct and assembly tool☆53Updated this week
- SV genotyping with long reads☆39Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆22Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- ☆24Updated 3 months ago
- Structural variant caller for low-depth long-read sequencing data☆46Updated last week
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- De novo construction of isoforms from long-read data☆31Updated 2 weeks ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆25Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago