Alternatives and similar repositories for IsoCon

Users that are interested in IsoCon are comparing it to the libraries listed below

• PacificBiosciences / pbampliconclustering
  exploratory scripts for clustering ccs amplicon data
  ☆11Updated 4 years ago
• PacificBiosciences / pbAA
  ☆27Updated 7 months ago
• UCSC-nanopore-cgl / margin
  ☆33Updated 2 years ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆35Updated 5 months ago
• WGLab / RepeatHMM
  a hidden Markov model to infer simple repeats from genome sequences
  ☆37Updated 4 years ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆78Updated 6 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• mcfrith / tandem-genotypes
  ☆49Updated last year
• cytham / nanovar
  Structural variant caller for low-depth long-read sequencing data
  ☆45Updated 3 weeks ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆23Updated 2 years ago
• human-pangenomics / hprc_intermediate_assembly
  ☆38Updated 2 weeks ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆36Updated 5 months ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• koszullab / instaGRAAL
  Large genome reassembly based on Hi-C data, continuation of GRAAL
  ☆42Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last month
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆38Updated last year
• KolmogorovLab / Wakhan
  Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
  ☆57Updated this week
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆52Updated 7 months ago
• nanoporetech / isONclust2
  A tool for de novo clustering of long transcriptomic reads
  ☆15Updated 3 years ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆45Updated last month
• Dfam-consortium / FamDB
  FamDB file format library and utilities
  ☆31Updated last month
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆57Updated 2 months ago
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆45Updated last month
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆54Updated 2 months ago
• estebanpw / chromeister
  A dotplot generator for large chromosomes
  ☆43Updated 2 years ago
• PacificBiosciences / apps-scripts
  Miscellaneous scripts for applications of PacBio systems
  ☆27Updated 3 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆21Updated 3 years ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated last month
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 2 months ago