Alternatives and similar repositories for MOPline

Users that are interested in MOPline are comparing it to the libraries listed below

• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆36Updated last month
• mcfrith / tandem-genotypes
  ☆48Updated last year
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 2 years ago
• maickrau / ribotin
  ☆36Updated last week
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• ablab / VerityMap
  ☆35Updated 2 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• farhangus / Sniffles2_plot
  ☆31Updated 10 months ago
• caaswxb / SRY
  SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.
  ☆18Updated last year
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 4 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆16Updated last year
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆33Updated 6 years ago
• codeatcg / VRPG
  an interactive visualization and interpretation framework of reference-projected pangenome graphs
  ☆36Updated 5 months ago
• Nextomics / nextsv
  ☆34Updated last year
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆40Updated 7 months ago
• shilpagarg / DipAsm
  ☆76Updated 5 years ago
• mrvollger / NucFreq
  ☆37Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆21Updated 8 months ago
• MeHelmy / princess
  ☆80Updated 4 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 4 months ago
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆34Updated last year
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆43Updated last month
• baozg / phased-assembly-check
  ☆30Updated 6 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 3 years ago