stat-lab / MOPlineLinks
Detection and genotyping of structural variants
☆18Updated 2 months ago
Alternatives and similar repositories for MOPline
Users that are interested in MOPline are comparing it to the libraries listed below
Sorting:
- ☆30Updated 5 years ago
- SV calling for diploid assemblies☆27Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- ☆35Updated this week
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 3 months ago
- ☆42Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated last week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆30Updated 5 months ago
- ☆35Updated 2 years ago
- ☆48Updated last year
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 7 months ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆39Updated 4 years ago
- ☆30Updated 10 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- Structural variant caller☆54Updated 3 years ago
- ☆17Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago