stat-lab / MOPlineLinks
Detection and genotyping of structural variants
☆18Updated 5 months ago
Alternatives and similar repositories for MOPline
Users that are interested in MOPline are comparing it to the libraries listed below
Sorting:
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆31Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆42Updated last year
- ☆48Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 6 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- ☆31Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 6 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- ☆36Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆19Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- ☆30Updated 8 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆77Updated 5 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Updated last month
- ☆27Updated 2 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- SV calling for diploid assemblies☆28Updated last year
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆36Updated last month
- ☆36Updated 2 years ago