kammoji / gapFinisherLinks
A reliable gap filling pipeline for draft genomes
☆11Updated 6 years ago
Alternatives and similar repositories for gapFinisher
Users that are interested in gapFinisher are comparing it to the libraries listed below
Sorting:
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆14Updated 6 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- Merging assemblies by using adjacency algebraic model and classification☆22Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- ☆28Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- The MafFilter genome alignment processor☆19Updated 5 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- A tool for recovering synteny blocks from multiple alignment☆31Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- Diploid genome assembly analysis tools☆14Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated last month
- Consensus genome annotation using OMA☆27Updated 4 months ago
- FastK based version of Merqury☆28Updated last month
- Yet another Hi-C scaffolding tool☆22Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year