wushyer / RGAAT_v2
Add multiple thread function for genome comparison
☆15Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for RGAAT_v2
- Domain based annotation of transposable elements☆19Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- Yet another Hi-C scaffolding tool☆19Updated last month
- ☆28Updated 2 years ago
- assembly evaluation tool☆34Updated 2 years ago
- ☆15Updated 2 years ago
- Genome alignment and synteny plots☆27Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆11Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 2 months ago
- A Hi-C scaffolding method☆22Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago
- ☆16Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- FastK based version of Merqury☆22Updated 3 weeks ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆12Updated 5 years ago
- Haploidy and Size Completeness Estimation☆13Updated 7 months ago
- Genome Annotation Pipeline☆32Updated 3 months ago
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- ☆19Updated 3 months ago
- ☆32Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆24Updated 5 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 3 months ago