☆10Jun 9, 2020Updated 6 years ago
Alternatives and similar repositories for sdip
Users that are interested in sdip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆78Jun 12, 2020Updated 6 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated 3 months ago
- assembly evaluation tool☆35May 11, 2022Updated 4 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated last year
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- ☆15Aug 6, 2020Updated 5 years ago
- ☆37Feb 22, 2023Updated 3 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- use long sequenced reads to close gaps in assemblies☆40Sep 4, 2018Updated 7 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Aug 22, 2023Updated 2 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- ☆63Sep 15, 2025Updated 9 months ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆44Jul 7, 2020Updated 5 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- ☆11Mar 4, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆94Feb 26, 2026Updated 4 months ago
- R Package for phasing of single cell Strand-seq data☆11Jan 14, 2025Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- Experimental String Graph construction and processing☆25Aug 14, 2023Updated 2 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Apr 20, 2023Updated 3 years ago
- ☆18Jan 29, 2025Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 6 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Aug 2, 2022Updated 3 years ago
- ☆15Apr 6, 2016Updated 10 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 5 months ago
- Long read / genome alignment software☆328Dec 16, 2025Updated 6 months ago