☆10Jun 9, 2020Updated 6 years ago
Alternatives and similar repositories for sdip
Users that are interested in sdip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆78Jun 12, 2020Updated 6 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- assembly evaluation tool☆36May 11, 2022Updated 4 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated 7 months ago
- ☆41Feb 22, 2023Updated 3 years ago
- ☆15Aug 6, 2020Updated 6 years ago
- ☆15Aug 22, 2023Updated 3 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆41Sep 4, 2018Updated 8 years ago
- ☆37Feb 22, 2023Updated 3 years ago
- Similar genome assisted reassembly pipeline for PacBio long reads☆11Dec 7, 2021Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ☆11Mar 4, 2025Updated last year
- ☆12Jun 7, 2024Updated 2 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆44Jul 7, 2020Updated 6 years ago
- Illumina read substitution and indel error corrector. Processes human WGS 45x depth reads in about 4 hours, resulting in the reads qualit…☆10Sep 17, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Updated this week
- ☆14Oct 14, 2020Updated 6 years ago
- R Package for phasing of single cell Strand-seq data☆11Jan 14, 2025Updated last year
- Code repository for the T2T-Y paper☆25Jul 11, 2023Updated 3 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- ☆63Sep 15, 2025Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- ☆124Updated this week
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Apr 20, 2023Updated 3 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆255Dec 16, 2025Updated 10 months ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated 2 years ago