shilpagarg / sdipLinks
☆10Updated 5 years ago
Alternatives and similar repositories for sdip
Users that are interested in sdip are comparing it to the libraries listed below
Sorting:
- recompute GFA link overlaps☆25Updated 3 years ago
- ☆15Updated 2 years ago
- ☆16Updated 3 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- ☆26Updated 4 years ago
- Scaffolding with Ultralong Reads☆15Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Convert HAL to VG☆23Updated last year
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- ☆14Updated 2 years ago
- ☆10Updated 9 months ago
- ☆13Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- ☆16Updated 4 years ago
- Long-read aligner to pangenome graphs☆28Updated last year
- ☆29Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- Tandem repeat genotyping with long reads☆33Updated 2 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Genome Assembly 102☆16Updated 7 months ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago