shilpagarg / sdip
☆10Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for sdip
- recompute GFA link overlaps☆25Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- Scaffolding with Ultralong Reads☆14Updated 4 years ago
- ☆16Updated 2 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated 9 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 2 months ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- ☆14Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆18Updated 2 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆12Updated 7 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆10Updated last year
- ☆15Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated last month
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- A Hi-C scaffolding method☆22Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- Tandem Repeats Finder: a program to analyze DNA sequences☆14Updated 2 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated last year
- Extracts subgraphs or components from a graph in GFA format☆22Updated this week
- Archived version 1.0.2☆16Updated 4 years ago
- FastK based version of Merqury☆22Updated 2 weeks ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆10Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆34Updated 2 years ago