shilpagarg / sdip
☆10Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for sdip
- Scaffolding with Ultralong Reads☆14Updated 4 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- ☆16Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 3 months ago
- ☆14Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- ☆15Updated 3 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆12Updated 7 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- A long-read analysis toolbox for cancer and population genomics☆20Updated 8 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆15Updated 9 months ago
- A Hi-C scaffolding method☆22Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆15Updated 4 months ago
- Archived version 1.0.2☆16Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated 2 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- ☆15Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- interactive Multi Objective K-mer Analysis☆23Updated last year
- Improved Phased Assembler☆28Updated 2 years ago
- Haploidy and Size Completeness Estimation☆13Updated 7 months ago
- A K-mer classifier for HiFi reads☆8Updated 9 months ago
- FastK based version of Merqury☆22Updated 3 weeks ago
- ☆19Updated 3 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆10Updated last year