hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
☆60Sep 23, 2025Updated 9 months ago
Alternatives and similar repositories for hecatomb
Users that are interested in hecatomb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated last month
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆39Apr 9, 2026Updated 2 months ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 11 months ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Updated this week
- Quickly get coverage statistics given reads and an assembly☆17May 13, 2024Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated 9 months ago
- Discover and annotate the virome☆63Jun 10, 2026Updated 3 weeks ago
- Reorients assembled microbial sequences☆141Updated this week
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆37Jun 26, 2026Updated last week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Dec 4, 2025Updated 7 months ago
- ☆13Aug 15, 2025Updated 10 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 7 months ago
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- ☆34Oct 6, 2025Updated 9 months ago
- fast phage annotation program☆215Jun 17, 2026Updated 2 weeks ago
- Strain resolver for metagenomics☆81Aug 2, 2024Updated last year
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆46Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆312Feb 3, 2026Updated 5 months ago
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 4 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆254May 13, 2026Updated last month
- A listing of software, tools and databases useful for virome analysis☆80Updated this week
- Visualize microbial evolution at the SNP level!☆16Aug 12, 2025Updated 10 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆91Dec 27, 2024Updated last year
- ☆18Mar 11, 2024Updated 2 years ago
- Graph-based assembly phasing☆97Nov 25, 2025Updated 7 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Jun 15, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆217Apr 24, 2026Updated 2 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆68Sep 5, 2024Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 5 months ago
- Metagenomic Binning Algorithm☆54Jan 16, 2026Updated 5 months ago
- ☆27Jan 30, 2025Updated last year