hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
☆60Sep 23, 2025Updated 6 months ago
Alternatives and similar repositories for hecatomb
Users that are interested in hecatomb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆42Feb 26, 2026Updated last month
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Apr 9, 2026Updated last week
- A repo with just adapter sequences☆15Jul 7, 2025Updated 9 months ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 7 months ago
- Discover and annotate the virome☆61Feb 11, 2026Updated 2 months ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆59Jun 4, 2025Updated 10 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 11 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆36Jan 22, 2026Updated 2 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆82Dec 4, 2025Updated 4 months ago
- ☆13Aug 15, 2025Updated 8 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 4 months ago
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- fast phage annotation program☆202Feb 1, 2026Updated 2 months ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- ☆34Oct 6, 2025Updated 6 months ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆45Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A listing of software, tools and databases useful for virome analysis☆69Apr 5, 2026Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆248Oct 12, 2025Updated 6 months ago
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 2 months ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 8 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Dec 27, 2024Updated last year
- ☆17Mar 11, 2024Updated 2 years ago
- Graph-based assembly phasing☆93Nov 25, 2025Updated 4 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆209Sep 22, 2023Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 4 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆68Sep 5, 2024Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 2 months ago
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 3 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Apr 10, 2026Updated last week