shihuang047 / 2bRAD-MLinks
☆19Updated 3 years ago
Alternatives and similar repositories for 2bRAD-M
Users that are interested in 2bRAD-M are comparing it to the libraries listed below
Sorting:
- ☆32Updated 2 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Updated 3 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 6 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- ☆22Updated 5 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆34Updated 2 months ago
- Some useful python scripts for biologists☆32Updated 9 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆41Updated 5 years ago
- A general metagenomics data mining system focus on robust microbiome research☆59Updated 11 months ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- gutSMASH☆55Updated 8 months ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 10 months ago
- Draw pan- and core-genome curves from proteinortho output☆10Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆32Updated 7 months ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 4 months ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆57Updated 2 months ago
- ☆13Updated 8 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last month
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 7 months ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 8 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆19Updated 7 years ago
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago
- ☆57Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago