shihuang047 / 2bRAD-MLinks
☆18Updated 3 years ago
Alternatives and similar repositories for 2bRAD-M
Users that are interested in 2bRAD-M are comparing it to the libraries listed below
Sorting:
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆41Updated 5 years ago
- ☆21Updated 5 years ago
- ☆32Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 4 months ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Updated 3 years ago
- ☆13Updated 10 months ago
- R package to predict microbial loads☆17Updated last month
- gutSMASH☆55Updated 3 weeks ago
- Some useful python scripts for biologists☆32Updated 11 months ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Updated 6 years ago
- ☆19Updated 8 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 5 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 9 months ago
- http://huttenhower.sph.harvard.edu/waafle☆22Updated 10 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Draw pan- and core-genome curves from proteinortho output☆10Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 10 months ago
- A simple plot library☆52Updated 8 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 6 months ago