statdivlab / happiLinks
A Hierarchical Approach to Pangenomics Inference
☆11Updated last year
Alternatives and similar repositories for happi
Users that are interested in happi are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆16Updated 3 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆15Updated 8 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- ☆13Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A Swiss-Army-Knife for Bioinformaticians☆12Updated last week
- Prediction of microbial interactions in complex communities☆12Updated last year
- Population genomics from metagenomes☆12Updated 11 months ago
- Prophage Activity Estimator☆26Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- ☆21Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- Microbial agile accurate SNP Typer☆30Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- Calculate assocations between genes and traits☆25Updated 5 months ago
- ☆13Updated 7 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 11 months ago
- scripts for microbiome analysis☆11Updated last year
- ☆16Updated 3 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 3 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 8 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 3 weeks ago