Asa12138 / pctax
Professional Comprehensive Omics Data Analysis
☆9Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for pctax
- ☆14Updated this week
- ☆15Updated last week
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆14Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆12Updated this week
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆29Updated 2 years ago
- ☆12Updated 7 years ago
- A microbiome analysis toolkit for R☆20Updated last year
- Tranform files to the microtable object in microeco package☆22Updated 2 weeks ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆14Updated 3 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- ☆14Updated 3 years ago
- ☆10Updated 3 years ago
- ☆15Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- code repo for mobileOG-db☆32Updated 4 months ago
- ☆45Updated 7 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- ☆23Updated 9 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆30Updated 4 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆19Updated 7 years ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆22Updated 3 weeks ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- ☆21Updated 4 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated last week
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- download isfinder database☆12Updated 6 years ago