Alternatives and similar repositories for pctax

Users that are interested in pctax are comparing it to the libraries listed below

• GRONINGEN-MICROBIOME-CENTRE / DMP
  Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…
  ☆34Updated 3 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated last month
• jiaonall / CRC-multi-kingdom
  This is the supplementary code for CRC-multi-kingdom
  ☆17Updated 3 years ago
• xielab2017 / EasyMicroPlot
  R package for downstream Microbiome analysis
  ☆28Updated 5 months ago
• wangzlab / COPD_multiomics
  This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…
  ☆32Updated 2 years ago
• StewartLab / Stewart_TEDDY_Microbiome_Analysis
  Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study
  ☆10Updated 6 years ago
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆19Updated 6 years ago
• grp-bork / microbial_load_predictor
  R package to predict microbial loads
  ☆15Updated last week
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated last year
• YuLab-SMU / MMINP
  Microbe-Metabolite INteractions-based metabolic profiles Predictor
  ☆15Updated 2 years ago
• EvaYiwenWang / PLSDAbatch
  Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.
  ☆12Updated 8 months ago
• abdohlman / tcma_code
  Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.
  ☆12Updated last year
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆28Updated 2 years ago
• blekhmanlab / host_gene_microbiome_interactions
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆32Updated 3 years ago
• cafferychen777 / MicrobiomeStat
  Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
  ☆42Updated 3 weeks ago
• xiaolw95 / NetMoss
  ☆14Updated 3 years ago
• lixiang117423 / qPCRtools
  ☆19Updated last year
• borenstein-lab / mimosa2
  ☆13Updated 5 months ago
• taowenmicro / Rcoding
  微生信生物
  ☆22Updated 2 months ago
• nongxinshengxin / RNAdiffAPP
  ☆17Updated last year
• LironZa / MWAS
  ☆10Updated last year
• kosticlab / universe_of_genes_scripts
  Code for running the analysis in our universe of genes project
  ☆8Updated 6 years ago
• YongxinLiu / Amplicon2022
  High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis
  ☆15Updated 2 years ago
• joshuakirsch / pseudoR
  ☆17Updated 6 months ago
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆22Updated last year
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated last year
• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆31Updated 7 months ago
• ththi / Microbial-Interkingdom-Suppl
  Scripts and data for Duran & Thiergart et al. Cell, 2018
  ☆24Updated 6 years ago
• microbiome-resources / Qiime2-Microbiome-workshop
  ☆15Updated 2 years ago
• shihuang047 / re-benchmarking
  ☆15Updated 4 years ago