Asa12138 / pctaxView external linksLinks
Professional Comprehensive Omics Data Analysis
☆29Updated this week
Alternatives and similar repositories for pctax
Users that are interested in pctax are comparing it to the libraries listed below
Sorting:
- Useful Utilities for Statistics and Visualization.☆30Jun 26, 2025Updated 7 months ago
- Network analysis for multi-omics☆101Updated this week
- Generalized Reporter Score-based Functional Enrichment Method for Omics Data☆86Jun 19, 2025Updated 7 months ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- ☆22Apr 20, 2023Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- R codes and data for 'Smoking, Alcohol consumption, and 24 Gastrointestinal Diseases: Mendelian Randomization Analysis'☆11Mar 5, 2023Updated 2 years ago
- The ProteoCancer Analysis Suite (PCAS) utilizes the CPTAC database to integrate proteomics, phosphoproteomics, and transcriptomics for ca…☆21Jun 18, 2025Updated 7 months ago
- ☆20Sep 4, 2024Updated last year
- ☆11Mar 11, 2025Updated 11 months ago
- A Swiss-Army-Knife for Bioinformaticians☆14Jan 27, 2026Updated 2 weeks ago
- Bioinformatics with R cookbook☆12Apr 3, 2019Updated 6 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Jul 30, 2024Updated last year
- ☆18Oct 13, 2023Updated 2 years ago
- ☆13Jan 12, 2026Updated last month
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 3 months ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆71Mar 16, 2025Updated 10 months ago
- ☆17Jun 25, 2025Updated 7 months ago
- ☆13Sep 4, 2017Updated 8 years ago
- code repo for mobileOG-db☆46Nov 6, 2025Updated 3 months ago
- R implementation of the LEfSe method☆63Nov 17, 2025Updated 2 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆46Jan 22, 2026Updated 3 weeks ago
- A manually curated database of human gut metabolic modules.☆17Jul 27, 2018Updated 7 years ago
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆53Nov 15, 2023Updated 2 years ago
- Clermont PCR method In-Silico☆25Feb 8, 2024Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Apr 20, 2023Updated 2 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Apr 16, 2019Updated 6 years ago
- Support scripts for the visualisation of pangenome analyses in Graphia☆21Oct 7, 2024Updated last year
- EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research☆100Dec 17, 2025Updated last month
- This code relates to the project titled "Depression and risk of gastrointestinal disorders: a comprehensive two-sample Mendelian randomiz…☆20Feb 1, 2023Updated 3 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 2 months ago
- Easy Metagenome Pipeline☆520Feb 3, 2026Updated last week
- A healthy human gut genome collection☆25Aug 21, 2025Updated 5 months ago
- Open prediction of Polysaccharide Utilisation Loci (PUL)☆24Apr 22, 2020Updated 5 years ago
- Software for predicting translation initiation rates in bacteria☆31Jul 30, 2025Updated 6 months ago
- A general metagenomics data mining system focus on robust microbiome research☆58Jan 30, 2026Updated 2 weeks ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Jun 24, 2021Updated 4 years ago