Alternatives and similar repositories for VMGC

Users that are interested in VMGC are comparing it to the libraries listed below

• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆41Updated last year
• R-Wright-1 / kraken_metaphlan_comparison
  R markdown documents copied from other folders on Dec 15th 2021
  ☆14Updated 2 months ago
• ablab / viralComplete
  viralComplete: BLAST-based viral completeness verification
  ☆24Updated 4 years ago
• deng-lab / viroprofiler
  A containerized bioinformatics pipeline for viral metagenomic data analysis
  ☆37Updated last year
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated 2 months ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆58Updated 3 months ago
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆20Updated 6 months ago
• Gibbons-Lab / medi
  Metagenomic Estimation of Dietary Intake and Content.
  ☆38Updated 9 months ago
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆49Updated last week
• alienzj / gtdb2ncbi
  GTDB => NCBI
  ☆15Updated last year
• Magdoll / MagPhase
  Phasing for metagenomics using PacBio long reads
  ☆16Updated 4 years ago
• guanxiangliang / liang2019
  Step-wise assembly of the neonatal virome modulated by breast feeding.
  ☆11Updated 4 years ago
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆25Updated 5 months ago
• TingtZHENG / VirMiner
  Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates
  ☆18Updated 5 years ago
• shiraz-shah / VFCs
  Code for de novo discovery of viral families in virome data
  ☆16Updated last year
• cai91 / GPD
  This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
  ☆19Updated 4 years ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆50Updated 2 years ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆71Updated 2 months ago
• metagenopolis / meteor
  Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…
  ☆34Updated last month
• combogenomics / CONTIGuator
  Bacterial genomes finishing tool for structural insights on draft genomes
  ☆23Updated 2 years ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆41Updated 2 months ago
• SushiLab / omrgc_v2_scripts
  ☆11Updated last year
• shenwei356 / ictv-taxdump
  NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
  ☆22Updated 8 months ago
• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆20Updated 3 years ago
• metashot / prok-quality
  Assessing the quality of prokaryotic genomes, filtering and dereplication
  ☆11Updated 3 years ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆39Updated last year
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆39Updated 4 months ago
• cruizperez / FastAAI
  ☆25Updated last year
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆42Updated last year