vaginal microbiota
☆12Jan 21, 2025Updated last year
Alternatives and similar repositories for VMGC
Users that are interested in VMGC are comparing it to the libraries listed below
Sorting:
- MicrobiomeReview☆11Jun 6, 2023Updated 2 years ago
- Prophage Activity Estimator☆32May 30, 2024Updated last year
- Identifying misassemblies via deep learning☆11May 1, 2024Updated last year
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Jul 15, 2025Updated 8 months ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 4 months ago
- a user-friendly and flexible pipeline for prokaryote genome analysis☆69Updated this week
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 6 months ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 2 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 3 months ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 5 months ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆60Mar 3, 2026Updated 2 weeks ago
- Unified Human Gut Virome Catalog☆41Nov 10, 2025Updated 4 months ago
- Discover and annotate the virome☆59Feb 11, 2026Updated last month
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- Find Co-Abundant Groups of Genes☆11Aug 3, 2020Updated 5 years ago
- ☆34Oct 6, 2025Updated 5 months ago
- ☆15Sep 15, 2022Updated 3 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆19Oct 19, 2023Updated 2 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 10 months ago
- ☆45Jun 27, 2023Updated 2 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- Data files useful for BLUPF90 programs☆19Feb 26, 2021Updated 5 years ago
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆14Mar 25, 2022Updated 3 years ago
- Supporting code for uncultivated gut virus manuscript☆78Jul 17, 2023Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆50Feb 26, 2026Updated 3 weeks ago
- A tool for identifying active prophage elements through read mapping☆13Oct 9, 2023Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 6 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- ☆20Mar 29, 2022Updated 3 years ago
- SURPI☆86May 10, 2016Updated 9 years ago
- ☆21May 6, 2025Updated 10 months ago