biobakery / metawibele
MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome
☆21Updated 3 months ago
Alternatives and similar repositories for metawibele:
Users that are interested in metawibele are comparing it to the libraries listed below
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 2 months ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- OPAL: Open-community Profiling Assessment tooL☆27Updated this week
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 3 years ago
- Taxonomic classification of viruses at Order and Family level☆19Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Prophage Activity Estimator☆26Updated 7 months ago
- ☆25Updated 11 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- ☆16Updated 4 years ago
- ☆48Updated 10 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆28Updated last year
- ☆18Updated 2 years ago
- ☆24Updated 6 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 3 months ago
- ☆42Updated 3 years ago
- KEGG Module Evaluation Tool☆27Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆19Updated last year
- An algorithm for clustering metagenomic sequences.☆33Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated 2 months ago
- StrainEst - abundance estimation of strains☆21Updated 5 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago