biobakery / metawibeleLinks
MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome
☆21Updated 2 months ago
Alternatives and similar repositories for metawibele
Users that are interested in metawibele are comparing it to the libraries listed below
Sorting:
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- StrainEst - abundance estimation of strains☆21Updated 5 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆23Updated 2 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago
- ☆41Updated 4 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 8 months ago
- MAG Circularization Method☆33Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago
- ☆18Updated 3 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 6 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated 2 weeks ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- ☆32Updated 4 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Prophage Activity Estimator☆26Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 9 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- ☆27Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- ☆34Updated 2 years ago
- Strain Resolution ON Graphs☆48Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated last month