MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome
☆23Nov 25, 2025Updated 8 months ago
Alternatives and similar repositories for metawibele
Users that are interested in metawibele are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 8 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated last month
- ☆15May 7, 2022Updated 4 years ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆35Dec 4, 2025Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- A tool to assemble high-quality phages from metagenomes.☆22May 22, 2026Updated 2 months ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆28Mar 23, 2026Updated 4 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆25Jun 9, 2021Updated 5 years ago
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 5 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 8 months ago
- ☆29Jun 12, 2024Updated 2 years ago
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated last year
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 6 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆44Sep 3, 2024Updated last year
- ☆20Aug 10, 2022Updated 3 years ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆75Mar 14, 2026Updated 4 months ago
- Opinionated viral metagenomics workflow☆16Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆61May 24, 2026Updated 2 months ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆26Updated this week
- ☆11Jul 3, 2022Updated 4 years ago
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 5 years ago
- The binning tool with dynamic contrastive learning and deep language model☆25Nov 14, 2025Updated 8 months ago
- ☆18Feb 19, 2021Updated 5 years ago
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated 10 months ago
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 6 months ago
- MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques☆14Dec 16, 2025Updated 7 months ago
- From annotated genomes to metabolic screening in large scale microbiotas☆76Updated this week
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆16Jun 16, 2026Updated last month
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- ☆14Oct 29, 2024Updated last year