biobakery / metawibele
MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome
☆21Updated 4 months ago
Alternatives and similar repositories for metawibele:
Users that are interested in metawibele are comparing it to the libraries listed below
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated 3 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- MAG Circularization Method☆33Updated 2 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- ☆28Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆53Updated last week
- Prophage Activity Estimator☆26Updated 8 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 10 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 3 weeks ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆26Updated 2 weeks ago
- ☆16Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆41Updated 3 weeks ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated last year
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- ☆50Updated 11 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆17Updated 5 months ago
- StrainEst - abundance estimation of strains☆21Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- ☆18Updated 2 years ago
- ☆41Updated 4 years ago
- Gene-flank analysis tool☆27Updated 2 months ago