Alternatives and similar repositories for ProteinCell2023MicrobiomeReview:

Users that are interested in ProteinCell2023MicrobiomeReview are comparing it to the libraries listed below

• xinehc / args_oap
  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…
  ☆49Updated 10 months ago
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆43Updated 3 years ago
• qichao1984 / NCyc
  ☆49Updated 4 years ago
• P-kai / EasyNanoMeta
  A pipeline for nanopore long-read metagenomic analysis.
  ☆26Updated last month
• thanhleviet / ISfinder-sequences
  Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…
  ☆62Updated 4 years ago
• caozhichongchong / arg_ranker
  ☆28Updated last year
• Hydro3639 / NanoPhase
  Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …
  ☆30Updated last year
• clb21565 / mobileOG-db
  code repo for mobileOG-db
  ☆33Updated last week
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 3 years ago
• anw-sh / silva-138_classifiers
  Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
  ☆13Updated 7 months ago
• nekokoe / Plasmer
  An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
  ☆42Updated last year
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆69Updated last month
• samnooij / PathoFact
  Altered version of PathoFact to work more conveniently with SLURM and large input files
  ☆12Updated 2 months ago
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆56Updated last year
• minoh0201 / MetaCompare
  MetaCompare
  ☆17Updated 10 months ago
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆57Updated 3 years ago
• EMBL-PKU / BASALT
  ☆95Updated 7 months ago
• Arkadiy-Garber / FeGenie
  HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
  ☆54Updated 2 years ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆88Updated last year
• DeniRibicic / q2ONT
  Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2
  ☆28Updated 4 years ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆63Updated 5 months ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆60Updated last year
• allind / EukDetect
  ☆48Updated 9 months ago
• KennthShang / PhaBOX
  Local version of the virus identification and analysis web server (tool set)
  ☆41Updated 2 weeks ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆100Updated 3 years ago
• chengsly / DeepMicroClass
  ☆25Updated this week
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆69Updated 7 months ago
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆29Updated 6 years ago
• Saskia-Oosterbroek / decona
  fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
  ☆44Updated 6 months ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆88Updated 5 months ago