YunyunGao374 / ProteinCell2023MicrobiomeReviewView external linksLinks
MicrobiomeReview
☆11Jun 6, 2023Updated 2 years ago
Alternatives and similar repositories for ProteinCell2023MicrobiomeReview
Users that are interested in ProteinCell2023MicrobiomeReview are comparing it to the libraries listed below
Sorting:
- A pipeline for nanopore long-read metagenomic analysis.☆53Nov 26, 2025Updated 2 months ago
- EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research☆101Dec 17, 2025Updated 2 months ago
- vaginal microbiota☆12Jan 21, 2025Updated last year
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Jul 15, 2025Updated 7 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 2 months ago
- a user-friendly and flexible pipeline for prokaryote genome analysis☆69Jan 26, 2026Updated 3 weeks ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Aug 16, 2022Updated 3 years ago
- ☆28Jan 16, 2024Updated 2 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 4 months ago
- This repository contains original codes for major analyses in the manuscript 'The multi-kingdom airway microbiome mediates the interactio…☆13Apr 27, 2024Updated last year
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated last year
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- Easy Metagenome Pipeline☆520Feb 3, 2026Updated 2 weeks ago
- ☆10Mar 25, 2025Updated 10 months ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated last year
- ☆14Jun 24, 2019Updated 6 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 4 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆13Feb 6, 2026Updated last week
- ☆15May 22, 2025Updated 8 months ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 7 years ago
- Easy Amplicon data analysis pipeline☆343Jan 30, 2026Updated 2 weeks ago
- This project is designed to find the potential modifications in bacterial genomes.☆15Nov 6, 2024Updated last year
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- ☆13Sep 1, 2020Updated 5 years ago
- ☆20Sep 26, 2025Updated 4 months ago
- A collection of color palettes inspired by plants and pop culture.☆17Sep 3, 2025Updated 5 months ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 3 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Sep 23, 2025Updated 4 months ago
- Viral (meta)-genome assembly pipeline.☆17Jan 27, 2026Updated 3 weeks ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 5 years ago
- ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow☆20Jan 13, 2026Updated last month
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 3 years ago
- ☆20Mar 29, 2022Updated 3 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Oct 13, 2025Updated 4 months ago
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆21Aug 15, 2025Updated 6 months ago