ZhenyanZhang / ARG-globalLinks
Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk of ARGs from multiple perspectives by using these code.
☆19Updated 3 years ago
Alternatives and similar repositories for ARG-global
Users that are interested in ARG-global are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- ☆14Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆33Updated 3 years ago
- ☆20Updated 2 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Extract metadata from biosamples in NCBI☆17Updated 4 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Updated 3 months ago
- Population genomics from metagenomes☆12Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- ☆20Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- ☆13Updated 8 years ago
- ☆19Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 5 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10Updated last year
- ☆56Updated 6 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- Hydrocarbon biodegradation gene annotation☆19Updated 3 years ago
- ☆18Updated 3 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Updated last month
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated 5 months ago
- Analysing the genomic context of mobile genes☆11Updated 6 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆20Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago