Alternatives and similar repositories for ARG-global

Users that are interested in ARG-global are comparing it to the libraries listed below

• AlexanderLabWHOI / EukHeist
  ☆26Updated 2 years ago
• mgabriell1 / EUKsemble
  Pipeline for identification of eukaryotic contigs in metagenomic assemblies
  ☆13Updated last year
• wbazant / CORRAL
  ☆13Updated last year
• Wanli-HE / Plaspline
  ☆20Updated 2 years ago
• alexmsalmeida / metamap
  Snakemake workflow to map and quantify microbial genomes in metagenomic reads
  ☆12Updated last year
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 3 years ago
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆21Updated 2 years ago
• TingtZHENG / VirMiner
  Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates
  ☆18Updated 5 years ago
• putonti / virMine
  ☆18Updated 3 years ago
• biobakery / waafle
  http://huttenhower.sph.harvard.edu/waafle
  ☆20Updated 9 months ago
• wanyuac / GeneMates
  An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
  ☆26Updated 3 years ago
• wandreopoulos / deeplasmid
  ☆20Updated last year
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated 2 years ago
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated last year
• stajichlab / biosample_metadata
  Extract metadata from biosamples in NCBI
  ☆16Updated 4 years ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated last year
• valflanza / accnet
  ☆13Updated 8 years ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆37Updated 3 years ago
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆25Updated 6 months ago
• EnvGen / POGENOM
  Population genomics from metagenomes
  ☆12Updated last year
• caozhichongchong / arg_ranker
  ☆34Updated 3 months ago
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆27Updated 5 months ago
• arumugamlab / MIntO
  Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
  ☆14Updated 3 weeks ago
• allind / EukDetect
  ☆53Updated 2 months ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆31Updated last year
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆42Updated 2 years ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆53Updated 5 years ago
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆19Updated 2 years ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆21Updated 2 years ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆34Updated 2 years ago