Build a map of genes present across a set of microbial genomes
☆18Jan 23, 2026Updated last month
Alternatives and similar repositories for gig-map
Users that are interested in gig-map are comparing it to the libraries listed below
Sorting:
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated last month
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated last year
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 7 months ago
- Repo for Proksee Cmd Line Tools☆26Feb 22, 2023Updated 3 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 5 months ago
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- ☆29Jun 12, 2024Updated last year
- Pipelines used in the lab.☆15Mar 26, 2025Updated 11 months ago
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- R package for fetching and parsing data of the Human Microbiome Compendium☆17Jan 24, 2025Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆42Aug 13, 2025Updated 6 months ago
- R package to predict microbial loads☆17Updated this week
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆23Nov 25, 2025Updated 3 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Feb 4, 2026Updated last month
- Step-by-step guide to install and configure AlphaFold 3 using a Conda Python 3.11 environment. No system-wide installations required. ✅ …☆41Dec 23, 2025Updated 2 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 3 months ago
- ☆11Jul 3, 2022Updated 3 years ago
- Genome-Genome circle synteny☆25Dec 1, 2023Updated 2 years ago
- ☆23May 16, 2020Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆68Sep 5, 2024Updated last year
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆25Dec 4, 2023Updated 2 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆37Feb 17, 2026Updated 2 weeks ago
- Locate antiviral defence systems in prokaryotic genomes☆68Oct 22, 2024Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated 10 months ago
- ☆28Sep 28, 2024Updated last year
- Public repository for cFMD - curatedFoodMetagenomicData☆33Feb 12, 2026Updated 3 weeks ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆64Feb 12, 2026Updated 3 weeks ago
- ☆24Dec 5, 2018Updated 7 years ago
- highthroughput rRNA sequence classification and OTU mapping for metagenomic samples☆25Nov 3, 2023Updated 2 years ago
- Prokaryotic Pangenome Analysis☆24Dec 3, 2021Updated 4 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆35Nov 27, 2025Updated 3 months ago
- programmable access to GM repo☆29May 16, 2023Updated 2 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Jun 10, 2020Updated 5 years ago
- Code depository for papers☆27Oct 22, 2025Updated 4 months ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- ☆34Sep 5, 2024Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆128Jan 22, 2025Updated last year
- From annotated genomes to metabolic screening in large scale microbiotas☆69Jan 16, 2026Updated last month
- Simple bacterial assembly and annotation pipeline☆85Feb 23, 2026Updated last week