Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly
☆77Jun 28, 2026Updated last week
Alternatives and similar repositories for binchicken
Users that are interested in binchicken are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jun 20, 2023Updated 3 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Jul 1, 2026Updated last week
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆51Feb 5, 2026Updated 5 months ago
- MAGScoT - a MAG scoring and refinement tool☆47Apr 8, 2026Updated 3 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆191Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆75Mar 14, 2026Updated 3 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 5 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆164Jun 7, 2026Updated last month
- More scalable dereplication for metagenome assembled genomes☆85Updated this week
- ☆15Oct 14, 2023Updated 2 years ago
- A comprehensive prokaryotic genome annotation pipeline☆88Jun 3, 2026Updated last month
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆39Jul 1, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆256May 13, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Dec 4, 2025Updated 7 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆269Mar 20, 2025Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated last month
- Variational autoencoder for metagenomic binning☆329Apr 27, 2026Updated 2 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆102Updated this week
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 5 months ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆221May 9, 2026Updated last month
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆180Apr 6, 2026Updated 3 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆67Apr 10, 2025Updated last year
- Bifrost graph gene caller.☆98Jun 18, 2026Updated 2 weeks ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 2 months ago
- Strain resolver for metagenomics☆81Aug 2, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆61May 24, 2026Updated last month
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 7 months ago
- ☆66Apr 14, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated last month
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆51Apr 3, 2025Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Oct 24, 2025Updated 8 months ago