viromelab / tracespipe
Reconstruction and analysis of viral and host genomes at multi-organ level
☆22Updated 7 months ago
Alternatives and similar repositories for tracespipe
Users that are interested in tracespipe are comparing it to the libraries listed below
Sorting:
- VAPiD: Viral Annotation and Identification Pipeline☆52Updated 11 months ago
- Find and visualize rearrangements in DNA sequences☆55Updated last year
- de novo virus assembler of Illumina paired reads☆55Updated 4 years ago
- Systematic ProtEin AnnotatoR☆19Updated 7 months ago
- DEPRECATED: Use Cenote-Taker 3 instead☆14Updated last year
- A tool to find and visualize rearrangements in DNA sequences☆16Updated 5 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆34Updated 2 weeks ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Updated 4 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆28Updated last year
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 6 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- ☆26Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆28Updated 5 months ago
- GC Skew Test for Bacterial Genomes☆27Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆31Updated 9 months ago
- viralFlye pipeline☆18Updated 9 months ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Updated 3 years ago
- Implementation of ToL genome assembly workflows☆20Updated this week
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆24Updated 3 months ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Updated 2 years ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆36Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 10 months ago