Alternatives and similar repositories for tracespipe

Users that are interested in tracespipe are comparing it to the libraries listed below

• smortezah / smashpp
  Find and visualize rearrangements in DNA sequences
  ☆54Updated 2 months ago
• rcs333 / VAPiD
  VAPiD: Viral Annotation and Identification Pipeline
  ☆56Updated last year
• ktmeaton / NCBImeta
  Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).
  ☆50Updated 3 years ago
• moshi4 / MGCplotter
  Microbial Genome Circular plotting tool for comparative genomics using Circos
  ☆39Updated 3 years ago
• sharpton / shotmap
  A Shotgun Metagenome Annotation Pipeline
  ☆24Updated 8 years ago
• xmuyulab / Snipe
  Highly sensitive pathogen detection
  ☆12Updated 5 years ago
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 3 years ago
• StaPH-B / staphb_toolkit
  Python Toolkit for using containerized programs in either Singularity or Docker
  ☆29Updated last year
• HPCBio / TADA
  TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
  ☆22Updated 2 months ago
• pirovc / metameta
  ☆23Updated 6 years ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆49Updated 3 years ago
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆43Updated 5 years ago
• broadinstitute / GATK-for-Microbes
  ☆29Updated 4 years ago
• theiagen / public_health_viral_genomics
  Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…
  ☆41Updated last year
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 3 years ago
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆33Updated 4 years ago
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated 2 years ago
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆40Updated last month
• theiagen / public_health_bacterial_genomics
  ☆26Updated 2 years ago
• rrwick / Small-plasmid-Nanopore
  ☆13Updated 4 years ago
• hzi-bifo / Haploflow
  ☆30Updated 2 years ago
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆47Updated 2 years ago
• sdwfrost / gbmunge
  Munge GenBank files into FASTA and tab-separated metadata
  ☆15Updated last week
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆33Updated last year
• variant-database / vdb
  A SARS-CoV-2 Mutation Pattern Query Tool
  ☆17Updated 2 years ago
• gtonkinhill / pairsnp
  A set of scripts for calculating pairwise SNP distance
  ☆44Updated 3 years ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆15Updated 8 months ago
• eclarke / komplexity
  A method of assessing sequence complexity based on kmer frequencies
  ☆33Updated 7 years ago
• sgearle / bugwas
  Locus and lineage tests for bacterial GWAS
  ☆28Updated 8 years ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆47Updated last month