ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
☆75Aug 28, 2026Updated 3 weeks ago
Alternatives and similar repositories for args_oap
Users that are interested in args_oap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆39Sep 14, 2026Updated last week
- ☆15Apr 3, 2025Updated last year
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆20Apr 8, 2022Updated 4 years ago
- code repo for mobileOG-db☆51Jul 30, 2026Updated last month
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆55Aug 16, 2021Updated 5 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆50Apr 20, 2023Updated 3 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- ☆18Jan 12, 2026Updated 8 months ago
- ☆38Apr 15, 2024Updated 2 years ago
- This is the source code for ARGs-OAP v2.0 construction☆13Aug 1, 2019Updated 7 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆39Feb 26, 2023Updated 3 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆58Sep 15, 2026Updated last week
- MetaCompare☆20Mar 3, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 10 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆131Oct 30, 2023Updated 2 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- ☆27Apr 20, 2023Updated 3 years ago
- geNomad: Identification of mobile genetic elements☆334Mar 29, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 6 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆23Mar 20, 2026Updated 6 months ago
- Source code for the crAssphage project☆51Nov 11, 2025Updated 10 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆76Dec 28, 2019Updated 6 years ago
- Argo: species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping☆17Aug 24, 2026Updated last month
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 5 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆59Apr 30, 2026Updated 4 months ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆32Nov 9, 2025Updated 10 months ago
- ☆65Feb 27, 2024Updated 2 years ago
- ☆64Updated this week
- ☆27Jun 20, 2023Updated 3 years ago
- ☆15Feb 7, 2025Updated last year
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆223Jul 22, 2026Updated 2 months ago