xinehc / args_oapLinks
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
☆56Updated 4 months ago
Alternatives and similar repositories for args_oap
Users that are interested in args_oap are comparing it to the libraries listed below
Sorting:
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆47Updated 3 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆74Updated 6 months ago
- Horizontal gene transfer (HGT) identification pipeline☆61Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆72Updated 3 weeks ago
- code repo for mobileOG-db☆39Updated last month
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆44Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- ☆49Updated 4 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 8 months ago
- ☆32Updated last month
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆60Updated 3 years ago
- ☆109Updated last year
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 3 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆122Updated last year
- A pipeline for nanopore long-read metagenomic analysis.☆43Updated last month
- ☆29Updated 5 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 2 months ago
- ☆56Updated last year
- A toolbox for comparative genomics.☆104Updated 4 years ago
- ☆52Updated 2 weeks ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆72Updated last year
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Updated 4 years ago
- Local version of the virus identification and analysis web server (tool set)☆67Updated this week
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated 2 months ago
- Prediction of prophages from bacterial genomes☆78Updated last month
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 8 months ago